This repository contains scripts to create standardized load files for BEL Resources for use with the BEL.bio API.
Documentation <http://bel-resources.readthedocs.io/en/latest/>_
Run
bin/
The namespaces prefixes will preferentially use the identifiers derived from the identifiers-org/MIRIAM registry.
Additional biocontexts for these namespaces can be found here: https://github.com/prefixcommons/biocontext
We can use OWL terminologies by converting them from OWL to OBOGraph and OBOGraphs Github repo.
robot convert --input fma.owl --output fma.obo --format obo --check false
robot convert --input fma.owl --output fma.json --format json # OBOGraph format
For the OBOGraph (https://github.com/geneontology/obographs/), you can process the nodes and edges as indicated in the overview of OBOGraph above.
If you use robot to convert to OBO format - you'll need to remove the 'owl-axioms' entry. You can use grep -v ^owl-axioms <filename> to do this, but the recommended approach is to use OBOGraph format instead.