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Occupancy modelling functions - #25

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SunnyTseng merged 27 commits into
masterfrom
occupancy-modelling-functions
Jun 25, 2026
Merged

Occupancy modelling functions#25
SunnyTseng merged 27 commits into
masterfrom
occupancy-modelling-functions

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@SunnyTseng

@SunnyTseng SunnyTseng commented Jun 25, 2026

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Added two functions:

  • birdnet_detection_history()
  • birdnet_get_effort()

And one internal function:

  • birdnet_add_site()

SunnyTseng added 27 commits June 12, 2026 15:27
@SunnyTseng
added the birdnet_add_site() function
d899bd4
@SunnyTseng
added roxygen for documentation
4943d8a
@SunnyTseng
fine tune the notes
3353579
@SunnyTseng
Add the new function in the documentation
49c2b99
@SunnyTseng
Added a new function birdnet_get_effort (export)
e247482
@SunnyTseng
birdnet_get_effort documentation, name space
fc818dc
@SunnyTseng
initial code for the detection history from template to the official …
844e732 
…document
@SunnyTseng
initial check throughout the code
3eba74d
@SunnyTseng
align the code
3c6b77e
@SunnyTseng
finalized the code content
eda744d
@SunnyTseng
updated the detection history documentation
c210193
@SunnyTseng
Update the documentation
4f007e5
@SunnyTseng
update parameter definition
e6563ad
@SunnyTseng
Updated dependency
05f45ae
@SunnyTseng
Added effort data as example datasets
8513d50
@SunnyTseng
Added data documentation
8fd381a
@SunnyTseng
reduced the species number in the example dataset
1293158
@SunnyTseng
format the function
e0e3164
@SunnyTseng
added effort matrix as one additional output from detection_matrix() …
13e8267 
…function
@SunnyTseng
Adopt the min_unique_days
67b4769
@SunnyTseng
Updated the function documentation
0fee008
@SunnyTseng
Added test functions for birdnet_add_site()
de1bf37
@SunnyTseng
cteated test file for detection_history() function
1915daf
@SunnyTseng
Added checkmate argument check for detection history
127fcbe
@SunnyTseng
initial test functions for detection_history
ffd89f5
@SunnyTseng
updated argument check and the test functions for get_effort()
5adbb04
@SunnyTseng
added withr as suggested dependency
1e2b04f
@SunnyTseng
SunnyTseng merged commit 10a01bc into master Jun 25, 2026
@SunnyTseng
SunnyTseng deleted the occupancy-modelling-functions branch June 25, 2026 21:29
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@SunnyTseng