Old Installation

CellModeller uses OpenCL via Andreas Kloekner's PyOpenCL package. You will need to install an OpenCL drivers and runtime.

Anaconda/Miniconda

We provide an installation script that works via Anaconda (or Miniconda). You first need to download and install the Anaconda distribution of python (www.anaconda.org), and then you can run the installer as follows.

Installer (Anaconda/Miniconda)

Download the installer (OSX, Linux), double click to extract, and then double click InstallCellModeller (on Linux, run the InstallCellModeller.sh script).

You now have a python environment (called cellmodeller) for running CellModeller. To run CellModeller via the GUI, open Terminal and enter:

$ cmgui

You can also run other python scripts, for example to analyse data or generate figures using the shortcut:

$ cmpython

You can now load and run models, take a look at the user guide and examples (also in ~/cellmodeller/Examples).

Custom installation

To manually install the CellModeller python package, or to see what the installer is doing click the link above.