Issues

• Reduce Java dependency by using python-based sparse exact nullspace computation

  enhancement
  Feature

  cnapy-org/CNApy#564 · Filter by author VonAlphaBisZulu opened on Jul 2, 2026
  1

  

• Add Exception or similar for metabolites without associated reactions

  enhancement
  cnapy-org/CNApy#561 · Filter by author PyLaRi24 opened on Apr 27, 2026
  2

  

• Attribute Error when optimizing tFBA for ATP Synthase

  bug
  cnapy-org/CNApy#560 · Filter by author PyLaRi24 opened on Apr 27, 2026
  2

  

• XCB error

  bug
  cnapy-org/CNApy#554 · Filter by author Paulocracy opened on Dec 18, 2025

• Error when loading strain design file

  bug
  cnapy-org/CNApy#545 · Filter by author Paulocracy opened on Sep 29, 2025

• Some reactions never have any flow after EFM analysis

  cnapy-org/CNApy#538 · Filter by author ThomasCronimus opened on Apr 1, 2025
  3

• Make search bar specific to reactions/metabolites/genes

  enhancement
  cnapy-org/CNApy#505 · Filter by author axelvonkamp opened on Feb 7, 2024

• Error trying FVA analysis

  bug
  cnapy-org/CNApy#499 · Filter by author Ivano2021 opened on Jan 27, 2024
  2

• CNApy&CPLEX error under Mac OS X

  enhancement
  cnapy-org/CNApy#491 · Filter by author fcatrambone opened on Jan 17, 2024
  4

• Use formation instead of reaction Gibbs energies in OptMDFpathway

  enhancement
  cnapy-org/CNApy#480 · Filter by author Paulocracy opened on Jun 27, 2023
  

• EFMTool failure

  enhancement
  cnapy-org/CNApy#466 · Filter by author dtusso2020 opened on Apr 9, 2023
  1

• Error with identifiers that contain special characters

  bug
  cnapy-org/CNApy#455 · Filter by author wbio99 opened on Feb 1, 2023
  1

• Create autosaves (every 10 min?)

  enhancement
  cnapy-org/CNApy#228 · Filter by author sthiele opened on May 26, 2021

• Automagically embed bitmap picture into svg when selcted as background image

  enhancement
  cnapy-org/CNApy#227 · Filter by author sthiele opened on May 26, 2021

• Compute in-out flux for metabolites in large networks makes the drop-down inconvenient.

  enhancement
  cnapy-org/CNApy#220 · Filter by author VonAlphaBisZulu opened on May 21, 2021

• Rendering Issue with SVG

  cnapy-org/CNApy#161 · Filter by author sthiele opened on Mar 26, 2021

• Performance issue when scrolling map

  testing
  cnapy-org/CNApy#111 · Filter by author sthiele opened on Jan 29, 2021
  1

• Create core module for non UI functionality

  cnapy-org/CNApy#87 · Filter by author sthiele opened on Dec 2, 2020
  

• Save application state on exit and recover on next startup

  enhancement
  cnapy-org/CNApy#81 · Filter by author sthiele opened on Nov 25, 2020

• Add function to interrupt long running computations

  enhancement
  cnapy-org/CNApy#30 · Filter by author sthiele opened on Sep 30, 2020