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Ci/speedup dependency install #678

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2b2a481
ci: install R deps as Posit binary packages
timcadman Jul 23, 2026
b4e55df
try: force CI
timcadman Jul 27, 2026
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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ You can install the released version of dsBaseClient from
[CRAN](https://cran.r-project.org/package=dsBaseClient) with:

``` r
install.packages("dsBaseClient")
install.packages("dsBaseClient")
```

And the development version from
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11 changes: 6 additions & 5 deletions armadillo_azure-pipelines.yml
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Expand Up @@ -134,11 +134,12 @@ jobs:

sudo apt-get install -qq libxml2-dev libcurl4-openssl-dev libssl-dev libgsl-dev libgit2-dev r-base -y
sudo apt-get install -qq libharfbuzz-dev libfribidi-dev libmagick++-dev libudunits2-dev libuv1-dev -y
sudo R -q -e "install.packages(c('devtools','covr'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('fields','meta','metafor','ggplot2','gridExtra','data.table'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('DSI','DSOpal','DSLite'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('MolgenisAuth', 'MolgenisArmadillo', 'DSMolgenisArmadillo'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('DescTools','e1071'), dependencies=TRUE, repos='https://cloud.r-project.org')"

# Use Posit Public Package Manager, which serves precompiled binary packages
# for this Ubuntu release instead of source - so dependencies are downloaded
# rather than compiled (the slow part). The HTTPUserAgent option is what makes
# the manager hand back binaries.
sudo R -q -e "options(repos=c(CRAN=paste0('https://packagemanager.posit.co/cran/__linux__/', system('lsb_release -cs', intern=TRUE), '/latest')), HTTPUserAgent=sprintf('R/%s R (%s)', getRversion(), paste(getRversion(), R.version\$platform, R.version\$arch, R.version\$os)), Ncpus=4); install.packages(c('devtools','covr','fields','meta','metafor','ggplot2','gridExtra','data.table','DSI','DSOpal','DSLite','MolgenisAuth','MolgenisArmadillo','DSMolgenisArmadillo','DescTools','e1071'), dependencies=TRUE)"

sudo R -q -e "library('devtools'); devtools::install_github(repo='datashield/dsDangerClient', ref='v6.3.4-dev', dependencies = TRUE)"

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12 changes: 6 additions & 6 deletions opal_azure-pipelines.yml
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Expand Up @@ -115,12 +115,12 @@ jobs:

sudo apt-get install -qq libxml2-dev libcurl4-openssl-dev libssl-dev libgsl-dev libgit2-dev r-base -y
sudo apt-get install -qq libharfbuzz-dev libfribidi-dev libmagick++-dev libudunits2-dev libuv1-dev -y
sudo R -q -e "install.packages(c('curl','httr'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('devtools','covr'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('fields','meta','metafor','ggplot2','gridExtra','data.table'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('DSI','DSOpal','DSLite'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('MolgenisAuth', 'MolgenisArmadillo', 'DSMolgenisArmadillo'), dependencies=TRUE, repos='https://cloud.r-project.org')"
sudo R -q -e "install.packages(c('DescTools','e1071'), dependencies=TRUE, repos='https://cloud.r-project.org')"

# Use Posit Public Package Manager, which serves precompiled binary packages
# for this Ubuntu release instead of source - so dependencies are downloaded
# rather than compiled (the slow part). The HTTPUserAgent option is what makes
# the manager hand back binaries.
sudo R -q -e "options(repos=c(CRAN=paste0('https://packagemanager.posit.co/cran/__linux__/', system('lsb_release -cs', intern=TRUE), '/latest')), HTTPUserAgent=sprintf('R/%s R (%s)', getRversion(), paste(getRversion(), R.version\$platform, R.version\$arch, R.version\$os)), Ncpus=4); install.packages(c('curl','httr','devtools','covr','fields','meta','metafor','ggplot2','gridExtra','data.table','DSI','DSOpal','DSLite','MolgenisAuth','MolgenisArmadillo','DSMolgenisArmadillo','DescTools','e1071'), dependencies=TRUE)"

sudo R -q -e "library('devtools'); devtools::install_github(repo='datashield/dsDangerClient', ref='6.3.4', dependencies = TRUE)"

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