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Features for multicellular parasite experiments
- #83
#83
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mmore500
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Features for multicellular parasite experiments
#83
mmore500
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Commits
Commits on May 9, 2023
Register KillDemePercent, DemeTreatmentAges actions
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Merge branch 'backtrace' into multicell-parasite
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Bugfix: make empty age list permit treat
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Impl, test kill% deme ID targeting
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Commits on May 12, 2023
Delete incorrect copy/pasted documentation
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Implement and test shell action
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Commits on May 13, 2023
Fix LoadPopulation parasite handling
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Merge branch 'master' into multicell-parasite
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Commits on Jun 5, 2023
Patch nullptr deref causing segault
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Test both deref steps around segfault
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Bugfix: don't overwrite args w/ filename
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Revert deref debugging changes
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Mark all deserialized genomes as external
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fixup! Mark all deserialized genomes as external
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Try marking genomes as internal instead
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Commits on Jun 6, 2023
Exclude parasites from org, systematics construct
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Merge branch 'multicell-parasite-rollback' into multicell-parasite
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Mark parasites as external from file
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Merge pull request #65 from devosoft/master
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fixup! Merge pull request #65 from devosoft/master
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Set a more useful parasite source arg
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Commits on Jul 6, 2023
Impl, test opt-in injection logging
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Merge branch 'parasite-log-injections' into HEAD
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Implement, test inject only if extinct
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Impl, test parasite injection stride
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Merge branch 'parasite-inject-features' into multicell-parasite
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Commits on Aug 26, 2023
Merge branch 'master' into multicell-parasite
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Commits on Aug 29, 2023
Merge pull request #72 from devosoft/master
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Commits on Aug 30, 2023
Merge pull request #74 from devosoft/master
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Enforce genome len bounds, and recover violations
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Commits on Aug 31, 2023
Try plain printf to diagnose garbage log values
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Bugfix: handle germline DUP source in pop load
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Commits on Sep 5, 2023
Fix inadvertent indexing one past end of string
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Un-hardcode DIVISION transtype in Genotype ctor
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Commits on Sep 6, 2023
Update tests to allow unknown src
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Merge branch 'master' into multicell-parasite
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Add stub test for TRANSSMT_DISABLE_NONPARASITE_INJECT
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Impl TRANSSMT_DISABLE_NONPARASITE_INJECT option
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Fix typo in comment
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Merge pull request #79 from devosoft/master
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Merge branch 'multicell-parasite' of github.com:devosoft/Avida into multicell-parasite
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Syntax fix; delete redundant is_parasite decl
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Add nop sterilization genome size recovery opt
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Add option to sterilize with nop-a
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Handle unknown transmission type deserialization
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Bugfix: handle DIV/DUP compare in sort
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Commits on Nov 15, 2023
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Commits on Nov 22, 2023
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Commits on Nov 24, 2023
Switch to simpler kill top parasite load impl
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Switch to simpler kill top parasite load impl
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Bugfix: don't misuse killmax as killprob
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Bugfix: make empty deme parasite load zero not nan
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Bugfix: actually apply immune protection
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Merge branch 'simpler-kill-parasite-load' into multicell-parasite
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Simplify syntax for mac CI compiler
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Simplify captures for early cxx compat
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Switch to manual lambdas
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Simplify deme replication
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Make kill demes action respect partitions
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Make birth count repl respect partitions
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Normalize immune memory by deme size, not cell count
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Commits on Nov 27, 2023
Impl, test ReplicateDemesHighestFecundity
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Commits on Nov 28, 2023
Add option to require full demes for replication
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Commits on Dec 13, 2023
Prevent and check for NaN memory scores
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Zero memory if emtpy (should be redundant)
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