Issues

• Planning Version 1.1

  release
  draeger-lab/SPECIMEN#48 · Filter by author cb-Hades opened on Oct 7, 2026

• Clearly define input format

  documentationhelp wantedrelease
  Task

  draeger-lab/SPECIMEN#37 · Filter by author cb-Hades opened on May 27, 2025

• Improve handling of bidirectional BLAST input files

  bugenhancementHQTB
  Feature

  draeger-lab/SPECIMEN#34 · Filter by author cb-Hades opened on May 9, 2025

• Enhance config validation

  configenhancement
  Task

  draeger-lab/SPECIMEN#33 · Filter by author cb-Hades opened on Mar 19, 2025
  1

• Add wrapper to CMPB

  CMPBenhancement
  Feature

  draeger-lab/SPECIMEN#31 · Filter by author cb-Hades opened on Mar 19, 2025

• Add more gap filling options to HQTB cleanup

  enhancementHQTBquestion
  Feature

  draeger-lab/SPECIMEN#29 · Filter by author cb-Hades opened on Mar 18, 2025

• Implement a consistent logging for SPECIMEN

  documentation
  Task

  draeger-lab/SPECIMEN#27 · Filter by author cb-Hades opened on Mar 18, 2025

• [BUG] COBRApy overwriting label content

  bughelp wanted
  Bug

  draeger-lab/SPECIMEN#25 · Filter by author cb-Hades opened on Mar 12, 2025

• QoL for developement of config YAMLs

  confighelp wanted
  Feature

  draeger-lab/SPECIMEN#24 · Filter by author cb-Hades opened on Mar 6, 2025
  1

• CMPB: create different levels of YAML configs

  CMPBconfigenhancement
  Task

  draeger-lab/SPECIMEN#22 · Filter by author cb-Hades opened on Jan 7, 2025

• Add FROG to workflows

  enhancement
  Feature

  draeger-lab/SPECIMEN#21 · Filter by author cb-Hades opened on Jan 7, 2025
  2

• Draft Model: better annotation with is / isHomologTo

  enhancementquestion
  draeger-lab/SPECIMEN#12 · Filter by author cb-Hades opened on Jul 11, 2024

• Implement PGAB pipeline

  enhancementPGAB
  Feature

  draeger-lab/SPECIMEN#10 · Filter by author cb-Hades opened on Jun 25, 2024
  

• Release 1.0.0 Tracker

  help wantedrelease
  draeger-lab/SPECIMEN#7 · Filter by author cb-Hades opened on Apr 25, 2024
  

• Documentation and examples

  documentation
  Task

  draeger-lab/SPECIMEN#5 · Filter by author cb-Hades opened on Apr 12, 2024

• Improvement of the extension module

  enhancementhelp wantedHQTB
  Task

  draeger-lab/SPECIMEN#3 · Filter by author cb-Hades opened on Feb 9, 2024