Simbio Tutorial

Simbio Tutorial for COMBINE 2026. To run in a browser following these links to run it on marimo.app:

• Poincare intro: https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/poincare_intro.py
• Simbio intro: https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/simbio_intro.py
• Volume interface: https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/volume_showcase.py
• Analysis tools: https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/analysis.py

For running it locally it is recommended to use pixi to manage environments. Run

pixi run open

to open landing page with all tutorial notebooks in browser or

pixi run open [path to notebook]

to open a specific tutorial.