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Add quantem.atoms: 3D atomic model analysis and atom tracing from volumes - #290

Merged

arthurmccray merged 12 commits into

electronmicroscopy:devfrom

Oct 26, 2026

Merged

Add quantem.atoms: 3D atomic model analysis and atom tracing from volumes#290
arthurmccray merged 12 commits into
electronmicroscopy:devfrom
cophus:atom_3d

Commits on Jun 14, 2026
- initial atomic tracing
  cophus
  committed
  b152cc6
Commits on Jun 15, 2026
- adding widget for 3d plotting
  cophus
  committed
  6aaa32b
Commits on Sep 15, 2026
- Merge branch 'dev' into atom_3d
  cophus
  committed
  3933881
- atoms module
  cophus
  committed
  57ee2eb
- fixes to atomic analysis and vis
  cophus
  committed
  1d1cb62
Commits on Sep 16, 2026
- updates
  cophus
  committed
  95b9c46
- atomic stuff
  cophus
  committed
  325aa9c
Commits on Oct 24, 2026
- Address review comments on quantem.atoms and the atom tracer
  
  cophus
  and
  claude
  committed
  aa3e785
- Merge dev into atom_3d
  cophus
  committed
  9f2f46f
- Port quantem.atoms to the torch-backed Vector
  
  cophus
  and
  claude
  committed
  74f2a44
Commits on Oct 26, 2026
- Merge dev into atom_3d
  cophus
  committed
  a033b0b
- Use core rotations for grain misorientation
  
  cophus
  and
  claude
  committed
  cfeb438