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Add orientation and phase mapping, Bloch-wave dynamical diffraction, calibration, strain and DDF - #297

Merged

smribet merged 53 commits into

electronmicroscopy:devfrom

cophus:acom

Oct 15, 2026

Merged

Add orientation and phase mapping, Bloch-wave dynamical diffraction, calibration, strain and DDF#297
smribet merged 53 commits into
electronmicroscopy:devfrom
cophus:acom

Commits on Aug 30, 2026
- updates to acom + DDF clustering
  cophus
  committed
  9621e26
Commits on Sep 1, 2026
- Edits to DDF and clustering
  maclariz
  committed
  1396e24
Commits on Sep 8, 2026
- adding bloch wave functions
  cophus
  committed
  eedf281
- Adding dynamical calculations, refinement
  cophus
  committed
  c3deefe
- various fixes
  cophus
  committed
  7aabfdc
Commits on Sep 9, 2026
- Adding diffraction widget
  cophus
  committed
  9f1043a
- Widget fixes
  cophus
  committed
  d50fec5
Commits on Sep 16, 2026
- Diffraction widget: CIF loader, faded Kikuchi overlay, continuous rotation buttons
  cophus
  committed
  ff57d6c
Commits on Sep 19, 2026
- Many fixes
  cophus
  committed
  859ce33
Commits on Sep 20, 2026
- More fixes.
  cophus
  committed
  28b4fd6
Commits on Sep 23, 2026
- fixes
  cophus
  committed
  8f318b2
- fixes
  cophus
  committed
  eb6a79c
Commits on Sep 24, 2026
- many fixes
  cophus
  committed
  e356c31
Commits on Sep 27, 2026
- Many updates including dynamical
  cophus
  committed
  4f128fd
Commits on Sep 28, 2026
- various fixes
  cophus
  committed
  b963666
- fixes to vis
  cophus
  committed
  531f3ac
- plotting fixes
  cophus
  committed
  c2b7236
- test update
  cophus
  committed
  2fcdf51
Commits on Oct 1, 2026
- one more arg
  cophus
  committed
  2850425
Commits on Oct 2, 2026
- ACOM updates
  cophus
  committed
  92862d4
- Merge origin/dev into acom
  
  cophus
  and
  claude
  committed
  603466e
- Migrate ACOM code to the torch-backed Vector
  
  cophus
  and
  claude
  committed
  727e625
- Store detected peaks in float32
  
  cophus
  and
  claude
  committed
  6ccbbcf
- adding foil normals and other fixes
  cophus
  committed
  00ae26e
- initial RMC build
  cophus
  committed
  e96a314
Commits on Oct 3, 2026
- more RMC updates
  cophus
  committed
  d18b8a1
Commits on Oct 4, 2026
- updates
  cophus
  committed
  f424e15
- updates to displacements
  cophus
  committed
  0888aae
- Merge PR #286 (maclariz/acom): DDF and clustering updates from Ian MacLaren
  
  cophus
  and
  claude
  committed
  8e516bd
- DDF: port Ian's virtual aperture and polar functions to Vector
  
  cophus
  and
  claude
  committed
  61f0c38
- Updating DDF functions
  cophus
  committed
  cdc3579
Commits on Oct 5, 2026
- few more DDF updates
  cophus
  committed
  48b5ad2
- changing layout of the diffraction demo
  cophus
  committed
  b638dbd
Commits on Oct 6, 2026
- various fixes
  cophus
  committed
  68d0ba9
Commits on Oct 7, 2026
- test fix
  cophus
  committed
  e6f2d7e
- RMC: shell pair correlations and longer Warren-Cowley range
  
  cophus
  and
  claude
  committed
  a6c306d
Commits on Oct 8, 2026
- fit probe circle option
  smribet
  committed
  56997f5
- Merge remote-tracking branch 'colin/acom' into acom
  smribet
  committed
  304b09a
- bug fix
  smribet
  committed
  44d8ec8
Commits on Oct 10, 2026
- RMC: export the fitted supercell to ase.Atoms and CIF
  
  cophus
  and
  claude
  committed
  4b51259
Commits on Oct 12, 2026
- some plotting changes
  smribet
  committed
  1041619
- test update
  smribet
  committed
  df9531e
- small errors.
  smribet
  committed
  38ecc5b
- warnings and plotting
  smribet
  committed
  2185181
Commits on Oct 13, 2026
- Bragg peak calibration fixes
  cophus
  committed
  b9c0e10
- Merge remote-tracking branch 'cophus/acom' into acom
  cophus
  committed
  af62799
- Merge branch 'dev' of https://github.com/electronmicroscopy/quantem into acom
  cophus
  committed
  2e3db89
- Unifying rotation calibration between diff_im and diff
  cophus
  committed
  d14142a
- changing gamma default to 1.0
  cophus
  committed
  ee3b1d4
Commits on Oct 14, 2026
- Fixes to load, adding calibration subsets
  cophus
  committed
  02681aa
- removing defaults.py, adding to args
  cophus
  committed
  95f528f
Commits on Oct 15, 2026
- more defaults
  smribet
  committed
  c8e0169
- comment on quaternion convention
  cophus
  committed
  74063e7

Commits

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Commits on Oct 14, 2026

Commits on Oct 15, 2026