ChAMP package is designed for conduct DNA methylation array analysis, providing service from data loading, to final gene set enrichment analysis .e.g.
More information could be find in Bioconductor page. Also we provided a more detailed guide in the HTML vignette.
This fork is based on ChAMP version 2.36 and includes the fix for the SVD to work with R version ≥ 4.0
Download the source code with this command line or through the github interface :
git clone https://github.com/eliopato/ChAMP.git
And install it with
R CMD INSTALL ChAMP
or from R Studio directly:
install.packages('/path/to/ChAMP', repos=NULL, type='source')
Current latest version: 2.36