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Signature-SNVs
Signature-SNVs PublicSignature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.
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fasta_snv_caller
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haplotype_visualizer
haplotype_visualizer PublicR project that is meant to visualize haplotypes for the Garud lab by Peter and Brendan
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Repositories
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Code for the manuscript: "The counteracting effects of hitchhiking and repulsion of deleterious alleles during a selective sweep"
- MAG-construction Public
This repository holds script related the Garud Lab's pipeline for constructing Metagenome Assembled Genomes (MAGs). The pipeline was developed by Adrian Verster.
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- DANNsweeps Public
- iLDS Public
- Wasney-Briscoe Public
- Yashas_Rotation Public
- haplotype_visualizer Public
R project that is meant to visualize haplotypes for the Garud lab by Peter and Brendan
- microbiome_demography_manuscript Public
GitHub repository for Mah, Lohmueller, and Garud 2023, bioRxiv
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