Issues

• methylation and SNP difference

  heathsc/gemBS#103 · Filter by author TheRainInSpain opened on Jun 5, 2024

• documentation page not find

  heathsc/gemBS#102 · Filter by author TheRainInSpain opened on May 7, 2024
  2

• Documentation (with SSL) cannot be accessed

  heathsc/gemBS#101 · Filter by author IsmailM opened on Jan 3, 2024

• mapped bam files: SM key without value

  heathsc/gemBS#100 · Filter by author NikolausMandlburger opened on Jun 27, 2023

• bs_call finished with -6

  heathsc/gemBS#99 · Filter by author PrashantKuntala opened on Feb 8, 2023

• snp extract "Invalid format"

  heathsc/gemBS#98 · Filter by author xiaoqiwang19 opened on Feb 2, 2023
  4

• System.Error::Signal raised (no=11) using bs_call

  heathsc/gemBS#97 · Filter by author dy-lin opened on Dec 1, 2022
  2

• Difference between bin/bs_call and gemBSbinaries/bs_call?

  heathsc/gemBS#96 · Filter by author dy-lin opened on Dec 1, 2022
  3

• The .bed file does not match the statistics of the REPORT

  heathsc/gemBS#95 · Filter by author ReinaWei opened on Oct 8, 2022

• mapping merge fails if one of the file_id's is equal to the Barcode

  heathsc/gemBS#94 · Filter by author IsmailM opened on Aug 31, 2022

• HowTo enable GPU for read mapping?

  heathsc/gemBS#93 · Filter by author claus-h-g opened on Aug 17, 2022
  7

• ValueError: Error while executing the Bisulfite bisulphite-mapping

  heathsc/gemBS#90 · Filter by author paul-sud opened on Mar 9, 2022
  14

• Scattering gemBS alignment step across a cluster

  heathsc/gemBS#84 · Filter by author gilhornung opened on Jul 7, 2021
  1

• Can't see colors for ENCODE bigBed on UCSC browser

  heathsc/gemBS#83 · Filter by author paul-sud opened on Mar 15, 2021
  4

• PBAT dataset failed in calling step

  heathsc/gemBS#82 · Filter by author ifishlin opened on Jan 20, 2021
  3

• how to set the control sequences?

  heathsc/gemBS#81 · Filter by author biozzq opened on Dec 25, 2020

• methylation calling issue on cluster

  heathsc/gemBS#79 · Filter by author wynstep opened on Nov 5, 2020
  1

• SNP extraction

  heathsc/gemBS#76 · Filter by author IsmailM opened on Sep 8, 2020
  2

• Wrong coverage

  heathsc/gemBS#75 · Filter by author wynstep opened on Mar 25, 2020
  3

• Specify target regions for snp calling && Extract SNPs only within target regions

  heathsc/gemBS#72 · Filter by author AndyWangSFU opened on Mar 16, 2020
  10

• analyze methyl-capture data

  heathsc/gemBS#67 · Filter by author RichardCorbett opened on Dec 19, 2019

• error "unrecognized CIGAR operator" when run gemBS map

  heathsc/gemBS#66 · Filter by author fyymxb opened on Nov 14, 2019
  1

• Documentation offline

  heathsc/gemBS#62 · Filter by author IsmailM opened on Sep 26, 2019

• Conversion rates are missing for some of the samples

  heathsc/gemBS#60 · Filter by author berguner opened on Aug 29, 2019
  3

• error running gemBS call

  heathsc/gemBS#58 · Filter by author lrsantiago opened on Aug 19, 2019
  9