General update to Ruby 1.9.3, libraries and addition of SCOOP functionality - #4

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jujaga wants to merge 137 commits into

hquery:masterfrom

scoophealth:master

Commits on Jun 13, 2013

Update Patient API documentation
rrusk
committed
ebecbd3
Pull patientapi from our fork
rrusk
committed
8a18328

Commits on Jun 19, 2013

Redirect quality-measure-engine to scoophealth fork
jujaga
committed
c654949

Commits on Jun 20, 2013

Work on unit testing. All tests now run but fail.
rrusk
committed
a4c0e08
More updates
rrusk
committed
ca132b4

Commits on Jun 21, 2013

Some tests now pass
rrusk
committed
65ac700

Commits on Jun 23, 2013

Removed bson_ext dependency
rrusk
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1d172bc
Some mods suggested by David Rusk
rrusk
committed
dff660f
Updated method for retrieving first record from User.
drusk
committed
9b40b74
Merge pull request #1 from drusk/testfixes
rrusk
committed
a3c3908
Updated method of calling after build in test factories.
drusk
committed
4c8137e
Updated call to render to remove deprecation warnings.
drusk
committed
8caecf6
Merge pull request #2 from drusk/testfix
rrusk
committed
c41b1be

Commits on Jun 24, 2013

Workaround for removal of QME::Importer::CodeSystemHelper after tag v1.0.4

Raymond Rusk
authored and
Raymond Rusk
committed
b865c41
Updated map_reduce to new syntax, and using raw strings in the ERB file
drusk
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5896cfd
Updated Query existence check to new API syntax.
drusk
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4780133
Merge pull request #3 from drusk/fixtests
rrusk
committed
d63ccf3
Fix deprecated code
rrusk
committed
d7eb60b
Made user trackable
rrusk
committed
96ef12e
Fixed couple of failures due to typo in completed_execution_for_generated_query factory
rrusk
committed
32bc4c3
Minor update
rrusk
committed
23d4824

Commits on Jun 25, 2013

Removed some code that created test errors that I had added earlier

Raymond Rusk
authored and
Raymond Rusk
committed
b5f8f98
Commented out assertions which no longer seem to hold with Mongoid
drusk
committed
ec37ccd
Merge pull request #4 from drusk/fix_test_failures
rrusk
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10997d5

Commits on Jun 27, 2013

Removed dependency on quality-measure-engine
rrusk
committed
7497593

Commits on Jun 29, 2013

Commits on Jul 2, 2013

Commits on Jul 3, 2013

reverted to slightly earlier patientapi to match query-gateway
rrusk
committed
19acee6

Commits on Jul 8, 2013

Remove unnecessary .gitkeep files
jujaga
committed
1af5526

Commits on Jul 10, 2013

Update/sync gem dependencies with gateway
jujaga
committed
50c01b0
Gemfile.lock update
jujaga
committed
7d743c0
Merge branch 'scoop-develop'
jujaga
committed
e4dd965
Reimplement jquery-rails lock on 1.0.19
jujaga
committed
8ca4b2a

Commits on Jul 11, 2013

Restore logout functionality
rrusk
committed
59cda5c
Firefox workaround for nuisance redirect warning in Query Builder
rrusk
committed
77d2fa6
Clarify browser workaround info
rrusk
committed
2e447c3
Fix url for browser workaround
rrusk
committed
bf5e3d6
Fix another typo in README.md
rrusk
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e1ca64b
Merge branch 'master' into scoop-develop
jujaga
committed
0fc6638
Merge branch 'scoop-develop'
jujaga
committed
fb2d73d

Commits on Jul 12, 2013

Add Webrick to gemfile to remove nuisance warning
rrusk
committed
4665c8f
Add note to README.md regarding Webrick quirk
rrusk
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8519065
Modifications made after upstream change.
rrusk
committed
412830d

Commits on Jul 15, 2013

Commits on Aug 7, 2013

Added SSL config for every requests targeted at Endpoint/HOOK, and SSL config for server
PierreBeucher
committed
2c24695

Commits on Aug 9, 2013

Add Travis CI Support
jujaga
committed
2713a62

Commits on Aug 15, 2013

Merge branch 'master' into scoop-develop
jujaga
committed
fb98d4d
Tweak Travis Icon
jujaga
committed
f08e22e
Merge branch 'scoop-develop'
jujaga
committed
5aefa26

Commits on Aug 23, 2013

Update patientapi to version with regex support, remove deprecated :confirm warnings
rrusk
committed
f144457

Commits on Aug 26, 2013

Merge branch 'scoop-develop' into ssl-dev
jujaga
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12f8522
Fix tests by chaning http to https
rrusk
committed
88c2bb9

Commits on Aug 27, 2013

Updated documentation for ssl
rrusk
committed
f0e0764
Reconstruct missing openssl root certificates
rrusk
committed
db668d6

Commits on Aug 29, 2013

Updated openssl self-signed certificates and documentation.
rrusk
committed
900bbd3

Commits on Aug 30, 2013

Merge branch 'scoop-develop'
jujaga
committed
6ca26ff

Commits on Sep 3, 2013

Tweaked runme.sh
jujaga
committed
e04b7a7
Removed some duplicate variable warnings
jujaga
committed
3b47563
Indentation cleanup
jujaga
committed
e8e277e

Commits on Sep 9, 2013

Modify so ssl can be toggled on or off
rrusk
committed
08003bb

Commits on Sep 11, 2013

Refactor ssl config
rrusk
committed
72b0ae5
Fixed unit tests so they work with and without ssl
rrusk
committed
63af1ff
Changed default to no ssl
rrusk
committed
34f7a05

Commits on Sep 13, 2013

Update some documentation links and typos
jujaga
committed
6cfc2bf
Merge branch 'ssl-dev' into scoop-develop
jujaga
committed
df3c9c3
Merge branch 'scoop-develop'
jujaga
committed
e2b0a91

Commits on Oct 4, 2013

Commits on Oct 7, 2013

Create PID file for server
rrusk
committed
7431d42

Commits on Oct 10, 2013

Remove If-Modified-Since and query_update_time checks - they cause jobs to stay in the queue even though they have been completed on the endpoints.
rrusk
committed
5796718

Commits on Jun 5, 2014

Added file describing system testing
rrusk
committed
faa3bc7

Commits on Jul 7, 2014

Changed log level and added more codes to the code system helper
rrusk
committed
538ab01

Commits on Jul 29, 2014

Unwrappered reduce iter behaviour
rrusk
committed
a7e793a

Commits on Aug 6, 2014

Sort queries by description
rrusk
committed
8080231
New default reduce function
rrusk
committed
f797b5d
Make handwritten javascript default choice
rrusk
committed
b8c2116

Commits on Aug 18, 2014

Correct patient age for leap years
rrusk
committed
1dbafc4

Commits on Aug 22, 2014

Commits on Sep 8, 2014

Use master branch of scoophealth patientapi
rrusk
committed
4099f42

Commits on Sep 10, 2014

Bumped rails to 3.2.13 for security reasons
rrusk
committed
fff6217

Commits on Sep 17, 2014

Use patientapi that tests for undefined birthtime
rrusk
committed
a1a5ee1

Commits on Oct 29, 2014

Document adding non-administrative users
rrusk
committed
4b10956
Cosmetic fix to README
rrusk
committed
4df5609

Commits on Nov 24, 2014

Guard against result.endpoint being nil
rrusk
committed
b513abc

Commits on Feb 3, 2015

Added UML diagrams generated by railroady
rrusk
committed
651b615

Commits on Feb 9, 2015

Add control scripts
rrusk
committed
93c96f1
Work in progress on batch processing of queries.
drusk
committed
bdc4d0f
Merge pull request #9 from drusk/execute_all_queries
rrusk
committed
4fd0c65
Added button to index page which prompts the user for the endpoints
drusk
committed
ba48278
Only show execute all queries button to non-admin users.
drusk
committed
5c66270
Merge pull request #10 from drusk/execute_all_queries
rrusk
committed
1886c0d

Commits on Feb 10, 2015

Renamed start/stop scripts as examples, added utility to report mongo data
rrusk
committed
965cdfc

Commits on Feb 12, 2015

Work in progress on STOPP reporting tool
rrusk
committed
2a570be
Mostly functional
rrusk
committed
326967c

Commits on Feb 13, 2015

Sort output by rule numbers
rrusk
committed
5e63bab
Removed some print statements
rrusk
committed
7136cf2
Rename STOPP report tool
rrusk
committed
bb815d9

Commits on Feb 27, 2015

Script to extract STOPP DQ queries
rrusk
committed
5565b12

Commits on Mar 4, 2015

Modify report for only later than specified date
rrusk
committed
26bff8a

Commits on Mar 26, 2015

Updated patientapi documentation
rrusk
committed
b3395d2
Use latest patientapi gem
rrusk
committed
04ccaea

Commits on Apr 19, 2015

Fixed bug in batch_query so only users queries are ran
rrusk
committed
f0e9f4b

Commits on Apr 20, 2015

Modified for v2 queries
rrusk
committed
ee7a778
Fixed bug
rrusk
committed
1232df2

Commits on Jul 28, 2015

Speedup dashboard status response
rrusk
committed
a5e78df
Version 2 of STOPP report
rrusk
committed
bd1b94f

Commits on Jul 30, 2015

Start of work on scheduled jobs
rrusk
committed
abcce69

Commits on Aug 5, 2015

initial work on scheduled query batch jobs
rrusk
committed
ee08f07
Select query by username
rrusk
committed
bb29006

Commits on Aug 7, 2015

Read parameters from file

Raymond Rusk
authored and
Raymond Rusk
committed
6d2dd0b

Commits on Aug 10, 2015

Allow more flexibility in strings describing endpoints and queries
rrusk
committed
4e98cd8
Add parallel query execution
rrusk
committed
508514e

Commits on Aug 25, 2015

Parallel queries are not working properly
rrusk
committed
714bc56

Commits on Sep 15, 2015

Add NRPE configuration used on hub
rrusk
committed
6cef57b
Make temporary files more recognizable.
rrusk
committed
408bd5b
Add Osler NRPE support
rrusk
committed
1f6854b

Commits on Sep 16, 2015

Improve script readability
rrusk
committed
a38e017

Commits on Sep 17, 2015

Work in progress on nagios3 configuration script
rrusk
committed
45e6b6a
Generates /etc/nagios3/commands.cfg
rrusk
committed
cf60a6b
Reorganize nagios support directory
rrusk
committed
7968e21
More re-organization of Nagios config
rrusk
committed
a5f780f

Commits on Sep 18, 2015

Generates Nagios configuration and hub NRPE server configuration
rrusk
committed
93637a3
Support for checking correctness of generated files
rrusk
committed
0b8b38f
Don't exit on verification errors
rrusk
committed
a0fae55
Remove non-existing endpoint from Nagios configuration
rrusk
committed
a7ce0f8
Fix name of service
rrusk
committed
3f41c7e
Documentation for PDC monitoring using Nagios
rrusk
committed
6cba6c2
Disable markdown
rrusk
committed
77762eb
Shorten lines in README
rrusk
committed
d0b7f4a