Whole genome or SNP based comparative phylogeographic analysis for co-distributed assemblages of communities. The result of aggregating a bunch of momis and dadis.
PTA requires python 3.9 at the moment.
- Install miniconda and activate conda
- Install PTA inside a clean conda environment:
conda create -n pta python=3.9 -y
conda activate pta
conda install -c PTA -c conda-forge -c bioconda pta momi scikit-bio scikit-learn boruta_py numpy=1.26.4 -y
If the conda install takes a very long time you can try changing the solver to libmamba. If you are impatient you should just do this right away because it works.
conda install -n base conda-libmamba-solver
conda config --set solver libmamba
Full installation and usage information is available on the PTA rtfd site