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Various bug fixes and some new features - #62

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julienbesle wants to merge 284 commits into
justingardner:masterfrom
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Open

Various bug fixes and some new features#62
julienbesle wants to merge 284 commits into
justingardner:masterfrom
julienbesle:current

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@julienbesle

@julienbesle julienbesle commented Mar 9, 2020

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Here are a number of commits I have made to my fork in the last 2 and a half years. These mostly include changes to the GLM_v2 and viewGUI plugins, but also bug fixes and a few new features in other mrLoadRet functions.

Bug fixes include:

  • a fix for mlrAdjustGUI.m with a few menu properties whose name changed around Matlab version 9.4 (fixes R2019a weirdness with plugins #61)
  • fixed issues with new graphic object handle class in glmPlot.m
  • a fix for mrSub2ind.m for Matlab 2024 and above
  • many others added since this pull request was first created

New features include

  • option to import a specific frame from a 4D nifti file as base anatomy (loadAnat.m)
  • option to export ROIs as Freesurfer label files
  • made convertROICorticalDepth.m scriptable.
  • option of extend surface ROIs into white matter by using negative cortical depths
  • many others added since this pull request was first created

None of these changes should affect the default behaviour of mrTools.

Cheers
Julien

@julienbesle julienbesle changed the title Various bug fixes and Various bug fixes and some new features Mar 9, 2020
…g coords to indices) to avoid choking on ROi coordinates outside the volume)
julienbesle and others added 11 commits April 6, 2025 02:07
… is an empty string and the preference has never been set previously
mrInterrogator and mrQuit bug fix
…r path and surfRelax destination folder path (defaults remain the same)
…name when using eval(sprintf('save ... because there may be spaces in the path (or even the file name)
…(and therefore mrGlobals), by testing if global variable MLR exists instead
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R2019a weirdness with plugins

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