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Add GitHub Actions CI and release workflows - #10
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🟡 Changes recommended
CI skips some non-CRAN tests, while releases can publish without tests and despite check warnings.
Review effort: Balanced
Findings: 3
Open (3)
What changed in this PR
Adds cross-platform R package CI and tag-based release automation.
Changes:
- Adds R CMD checks and standalone testthat execution.
- Builds and publishes checked source tarballs.
- Excludes workflow files from builds and adds a CI badge.
| File | Description |
|---|---|
README.md |
Adds the CI status badge. |
.Rbuildignore |
Excludes GitHub configuration from source builds. |
.github/workflows/R-CMD-check.yaml |
Adds cross-platform R checks and tests. |
.github/workflows/release.yaml |
Adds tagged release packaging and publication. |
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…ag version, fail on warnings
…kers can attach it
Previously the per-gene median was added to uncorrected data when batch had fewer than two levels. Now correction is skipped with a warning.
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Summary
.github/workflows/R-CMD-check.yaml): R CMD check on pushes to the default branch, pull requests and manual dispatch. Matrix: macOS, Windows and Ubuntu on R release, plus Ubuntu on R-devel and oldrel-1..github/workflows/release.yaml): on a version tag (v*or a tag starting with a digit), builds the source tarball, runsR CMD check --as-cranon it and attaches it to a GitHub release.^\.github$to.Rbuildignoreand an R-CMD-check badge to the README.tests/is excluded from the build via.Rbuildignore, so R CMD check does not run the tests. The CI workflow adds a separate step that runs the testthat suite from the repository.