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Name		Name	Last commit message	Last commit date
cellmap		cellmap
configs		configs
cryoet		cryoet
data_preprocessing		data_preprocessing
embl		embl
evaluation		evaluation
inference		inference
janelia		janelia
logs		logs
mobie		mobie
scripts		scripts
slurm_profiles		slurm_profiles
synapse		synapse
training		training
.gitignore		.gitignore
AGENTS.md		AGENTS.md
CLAUDE.md		CLAUDE.md
anwais_environment.yaml		anwais_environment.yaml
check_checkpoint.py		check_checkpoint.py
check_checkpoints.py		check_checkpoints.py
cooper_data_overview.csv		cooper_data_overview.csv
cooper_data_overview.csv.bak		cooper_data_overview.csv.bak
cryo_env.yaml		cryo_env.yaml
env.yaml		env.yaml
env_cellmap.yaml		env_cellmap.yaml
env_cpu.yaml		env_cpu.yaml
env_desktop.yaml		env_desktop.yaml
env_empanada.yaml		env_empanada.yaml
export_model.py		export_model.py
h5_paths_mitos.csv		h5_paths_mitos.csv
main.py		main.py
post_processing.py		post_processing.py
pyproject.toml		pyproject.toml
sbatch_runner.py		sbatch_runner.py
submit_gpu_job_grete.py		submit_gpu_job_grete.py
test.py		test.py
test_glob.py		test_glob.py
test_segment_imports.py		test_segment_imports.py
visualize.py		visualize.py
visualize_generic.py		visualize_generic.py
visualize_grid_search.py		visualize_grid_search.py
visualize_h5_simple.py		visualize_h5_simple.py
visualize_multi_format.py		visualize_multi_format.py
visualize_resize_zarr.py		visualize_resize_zarr.py
visualize_tiff_stack.py		visualize_tiff_stack.py
visualize_zarr.py		visualize_zarr.py

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