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tsmathis wants to merge 2 commits into from
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Automated dependency upgrades #553

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1f9c027
remove boltztrap2 upper bound and add allow 403 for lychee
minhsueh Nov 5, 2026
1589786
auto dependency upgrades
invalid-email-address Nov 5, 2026
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3 changes: 2 additions & 1 deletion .github/workflows/url-check.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,4 +17,5 @@ jobs:
uses: lycheeverse/lychee-action@v2
with:
# --exclude-loopback ensures we don't check localhost URLs
args: --exclude-loopback './**/*.md' './**/*.rst'
# --accept "200..=299,403" treats Cloudflare anti-bot blocks (403) as valid since the target page exists
args: --exclude-loopback --accept "200..=299,403" './**/*.md' './**/*.rst'
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -36,7 +36,7 @@ temdiff = ["py4DSTEM>=0.13.11"]
fermi = [
"ifermi",
"pyfftw",
"boltztrap2<25.11.1", # compilation issue when installing via pip
"boltztrap2",
]
phonon = ["phonopy"]
vtk = ["dash-vtk"]
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38 changes: 19 additions & 19 deletions requirements/ubuntu-latest_py3.11.txt
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Expand Up @@ -16,15 +16,15 @@ blake3==1.0.11
# via emmet-core
blinker==1.9.0
# via flask
boto3==1.43.117
boto3==1.43.125
# via mp-api
botocore==1.43.117
botocore==1.43.125
# via
# boto3
# s3transfer
cachelib==0.17.0
# via flask-caching
certifi==2026.10.19
certifi==2026.10.23
# via requests
charset-normalizer==3.5.2
# via requests
Expand Down Expand Up @@ -54,19 +54,19 @@ flask==3.1.3
# flask-caching
flask-caching==2.5.1
# via crystal_toolkit (pyproject.toml)
fonttools==4.67.0
fonttools==4.68.0
# via matplotlib
frozendict==2.4.7
frozendict==2.5.1
# via crystal_toolkit (pyproject.toml)
idna==3.20
# via requests
imageio==2.38.1
# via scikit-image
importlib-metadata==9.0.1
importlib-metadata==10.1.0
# via dash
inflect==7.6.0
# via emmet-core
ipython==9.17.1
ipython==9.18.1
# via crystal_toolkit (pyproject.toml)
ipython-pygments-lexers==1.1.1
# via ipython
Expand Down Expand Up @@ -116,7 +116,7 @@ mp-api==0.46.5
# via crystal_toolkit (pyproject.toml)
mpmath==1.3.0
# via sympy
narwhals==2.27.1
narwhals==2.28.0
# via
# plotly
# scikit-learn
Expand Down Expand Up @@ -153,7 +153,7 @@ packaging==26.3
# scikit-image
palettable==3.3.3
# via pymatgen-core
pandas==3.0.6
pandas==3.1.1
# via pymatgen-core
parso==0.8.7
# via jedi
Expand All @@ -178,18 +178,18 @@ pubchempy==1.0.5
# via emmet-core
pure-eval==0.2.4
# via stack-data
pyarrow==26.0.0
pyarrow==26.0.1
# via mp-api
pybtex==0.26.1
# via emmet-core
pydantic==2.14.1
pydantic==2.14.3
# via
# emmet-core
# pydantic-settings
# pymatgen-io-validation
pydantic-core==2.50.1
pydantic-core==2.50.4
# via pydantic
pydantic-settings==2.16.1
pydantic-settings==2.16.2
# via
# crystal_toolkit (pyproject.toml)
# emmet-core
Expand All @@ -198,12 +198,12 @@ pygments==2.21.0
# via
# ipython
# ipython-pygments-lexers
pymatgen==2026.9.24
pymatgen==2026.10.24
# via
# crystal_toolkit (pyproject.toml)
# emmet-core
# mp-api
pymatgen-core==2026.10.16
pymatgen-core==2026.10.31
# via
# emmet-core
# pymatgen
Expand Down Expand Up @@ -256,7 +256,7 @@ sympy==1.14.0
# via pymatgen-core
tabulate==0.10.0
# via pymatgen-core
threadpoolctl==3.7.0
threadpoolctl==3.8.0
# via scikit-learn
tifffile==2026.3.3
# via scikit-image
Expand All @@ -282,7 +282,7 @@ typing-extensions==4.16.0
# spglib
# typeguard
# typing-inspection
typing-inspection==0.4.4
typing-inspection==0.4.5
# via
# pydantic
# pydantic-settings
Expand All @@ -292,15 +292,15 @@ urllib3==2.8.0
# via
# botocore
# requests
wcwidth==0.9.3
wcwidth==0.9.4
# via prompt-toolkit
webcolors==25.10.0
# via crystal_toolkit (pyproject.toml)
werkzeug==3.1.9
# via
# dash
# flask
wrapt==2.5.1
wrapt==2.5.2
# via deprecated
zipp==4.1.2
# via importlib-metadata
Expand Down
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