Issues

• Use Remotes to install Maaslin2

  microbiomeDB/microbiomeComputations#35 · Filter by author bobular opened on Dec 18, 2025
  5

• maaslin2 dep install difficulties

  microbiomeDB/microbiomeComputations#34 · Filter by author d-callan opened on Nov 21, 2025

• add support for splinectomer

  microbiomeDB/microbiomeComputations#27 · Filter by author d-callan opened on Oct 2, 2024

• move isCutoff in rankedAbundance to computationDetails

  microbiomeDB/microbiomeComputations#26 · Filter by author asizemore opened on Sep 20, 2024
  1

• break beta div into two computations

  microbiomeDB/microbiomeComputations#15 · Filter by author d-callan opened on Feb 28, 2024
  3

• Return nicer error message when all ranked abundance ranking values are 0

  bugmicrobiome
  microbiomeDB/microbiomeComputations#14 · Filter by author d-callan opened on Feb 28, 2024
  6

• Collection data sent to ranked abundance do not all have ranges [0, 1]

  microbiomequestion
  microbiomeDB/microbiomeComputations#13 · Filter by author d-callan opened on Feb 28, 2024
  4

• Beta div using binary distance?

  microbiomeDB/microbiomeComputations#12 · Filter by author d-callan opened on Feb 28, 2024

• Add ANCOMBC

  microbiomeDB/microbiomeComputations#11 · Filter by author d-callan opened on Feb 28, 2024

• Expand statistics to include all other metadata

  microbiomeDB/microbiomeComputations#10 · Filter by author d-callan opened on Feb 28, 2024

• move data and metadata validation to abundance data class

  technical debt
  microbiomeDB/microbiomeComputations#9 · Filter by author d-callan opened on Feb 28, 2024

• have Comparator class check overlapping bins

  microbiomeDB/microbiomeComputations#8 · Filter by author d-callan opened on Feb 28, 2024

• Should we change the name of the Result classes?

  microbiomeDB/microbiomeComputations#7 · Filter by author d-callan opened on Feb 28, 2024
  1

• Diff abund: better support for longitudinal, metabolic data

  microbiome
  microbiomeDB/microbiomeComputations#6 · Filter by author d-callan opened on Feb 28, 2024

• Mbio: consider gsea-type app but for microbial signatures

  microbiome
  microbiomeDB/microbiomeComputations#5 · Filter by author d-callan opened on Feb 28, 2024

• Mbio: consider line fitting/ model building app

  microbiome
  microbiomeDB/microbiomeComputations#4 · Filter by author d-callan opened on Feb 28, 2024

• Microbiome: Try to speed up sparcc

  microbiome
  microbiomeDB/microbiomeComputations#2 · Filter by author d-callan opened on Feb 28, 2024