ml4bio

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1. RNA-FM RNA-FM Public

   Nature Methods: RNA foundation model (together with RhoFold)

   Jupyter Notebook 388 48

2. RhoFold RhoFold Public

   Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach

   Python 246 33

3. Dense-Homolog-Retrieval Dense-Homolog-Retrieval Public

   Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

   Python 126 11

4. e2efold e2efold Public

   pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

   Python 123 18

5. RhoDesign RhoDesign Public

   Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.

   Jupyter Notebook 65 6

6. RiboDiffusion RiboDiffusion Public

   ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

   Python 56 6