Issues

• Abra2 collapses genomic duplication in assembly, leading to false realignments

  mozack/abra#47 · Filter by author fbattke opened on Apr 23, 2025

• java.lang.IllegalStateException

  mozack/abra#46 · Filter by author lovelycatZ opened on Oct 20, 2022

• build issue

  mozack/abra#45 · Filter by author BJWiley233 opened on Jan 26, 2021

• Is it possible to get the assembled contig?

  mozack/abra#42 · Filter by author juberpatel opened on Apr 26, 2018
  2

• Change header in bam

  mozack/abra#37 · Filter by author FedikZe opened on Feb 28, 2018
  1

• Abra error

  mozack/abra#36 · Filter by author yuhongning opened on Jun 27, 2017
  2

• Amplicon data

  mozack/abra#31 · Filter by author mcgml opened on Oct 4, 2016
  5

• [Request] Replace System.out.print* statements with System.err.print* for stream compatibility

  mozack/abra#29 · Filter by author dnbaker opened on Jun 22, 2016
  3

• Error in Cadabra

  mozack/abra#28 · Filter by author GKerdivel opened on Jun 15, 2016
  4

• Exception in thread Error

  mozack/abra#26 · Filter by author tinuthomas opened on May 13, 2016
  2

• polyA/polyT/lowcomplexity region realignments for single ended reads

  mozack/abra#25 · Filter by author avilella opened on Feb 22, 2016
  3

• [fwrite] Remote I/O error

  mozack/abra#24 · Filter by author bcantarel opened on Dec 21, 2015
  5

• Excessive run time

  mozack/abra#23 · Filter by author dh10 opened on Dec 18, 2015
  2

• Bug in BED file parsing

  mozack/abra#22 · Filter by author marc-sturm opened on Nov 26, 2015

• Error running abra [0.96]

  mozack/abra#21 · Filter by author chisqr opened on Nov 13, 2015
  4

• Errors without BED file

  mozack/abra#18 · Filter by author adammaikai opened on Sep 1, 2015
  1

• does abra realign unaligned reads

  mozack/abra#13 · Filter by author dwaggott opened on Jan 9, 2015
  6

• 'align_to_contig.sam.sai' : No such file or directory

  mozack/abra#7 · Filter by author dh10 opened on Aug 7, 2014
  3