it is possible to apply ilastik in headless mode to preloaded arrays (here), maybe we should do this instead of saving images like in BrainLine and state_generation. I tried briefly but I think you need to use a conda environment to get the ilastik python package working.
it is possible to apply ilastik in headless mode to preloaded arrays (here), maybe we should do this instead of saving images like in BrainLine and state_generation. I tried briefly but I think you need to use a conda environment to get the ilastik python package working.