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fix-issue-101 feat: use BUSCO_DOWNLOAD_PATH env variable when available - #102

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nextgenusfs merged 1 commit into
nextgenusfs:mainfrom
thegrebe:main
Oct 19, 2026
Merged

nextgenusfs merged 1 commit into
nextgenusfs:mainfrom
thegrebe:main

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@thegrebe

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Solves #101

Considerations

  • wanted to avoid having duplicated BUSCO db (when one is already available on the system)
  • wanted to avoid having funannotate2-related data in already-available BUSCO db
  • wanted to avoid having to download the BUSCO db everytime at runtime when using Docker

Proposed solution

  • if BUSCO_DOWNLOAD_PATH env variable is set, then use it
  • if not, then fall back to current solution (FUNANNOTATE2_DB)

@thegrebe thegrebe changed the title feat: use BUSCO_DOWNLOAD_PATH env variable when available fix-issue-101 feat: use BUSCO_DOWNLOAD_PATH env variable when available Oct 16, 2026
@nextgenusfs
nextgenusfs merged commit 2c466a9 into nextgenusfs:main Oct 19, 2026
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2 participants