Issues

• Discrepancy in Abundances in Sensitive Mode

  nlapier2/Metalign#45 · Filter by author echolley31 opened on Jun 5, 2024

• Missing Files?

  nlapier2/Metalign#44 · Filter by author echolley31 opened on May 1, 2024
  2

• How are interleaved paired reads treated in Metalign?

  nlapier2/Metalign#41 · Filter by author aminards opened on Dec 1, 2022

• Metalign run error

  nlapier2/Metalign#40 · Filter by author premkrishnan opened on Sep 8, 2021
  5

• Build a customized database?

  nlapier2/Metalign#39 · Filter by author chunyuma opened on Apr 12, 2021
  11

• Handling long reads

  enhancement
  nlapier2/Metalign#37 · Filter by author nlapier2 opened on Jul 16, 2020
  1

• Minimizer pre-computing

  enhancement
  nlapier2/Metalign#36 · Filter by author nlapier2 opened on Jul 16, 2020

• setup_data.sh not in bioconda release

  high priority
  nlapier2/Metalign#35 · Filter by author dkoslicki opened on May 4, 2020
  1

  

• Update Wiki and readmes

  nlapier2/Metalign#34 · Filter by author dkoslicki opened on May 4, 2020
  1

  

• Possible missing genomes?

  nlapier2/Metalign#33 · Filter by author vrou1995 opened on Apr 1, 2020
  2

• Large Repo Size

  enhancementlow priority
  nlapier2/Metalign#32 · Filter by author nlapier2 opened on Mar 31, 2020

• Non-microbial organisms in training database

  low priority
  nlapier2/Metalign#30 · Filter by author dkoslicki opened on Mar 25, 2020
  1

  

• Add option to save the minimap2 output to file (instead of just streaming it through)

  enhancementgood first issue
  nlapier2/Metalign#28 · Filter by author dkoslicki opened on Feb 18, 2020

• Will need to re-train the default database

  high priority
  nlapier2/Metalign#25 · Filter by author dkoslicki opened on Jan 25, 2020
  4

  

• KMC fasta vs multi-fasta error

  buggood first issue
  nlapier2/Metalign#24 · Filter by author dkoslicki opened on Jan 23, 2020
  1

  

• Building the Metalign database from different sources

  enhancement
  nlapier2/Metalign#22 · Filter by author nlapier2 opened on Jan 22, 2020
  4

  

• db_info.txt read multiple times during normal run of Metalign

  enhancementlow priority
  nlapier2/Metalign#21 · Filter by author peterk87 opened on Jan 22, 2020
  2

• ZeroDivisionError: float division by zero

  bug
  nlapier2/Metalign#18 · Filter by author luhugerth opened on Jan 22, 2020
  4

  

• Use Python logging module?

  enhancement
  nlapier2/Metalign#17 · Filter by author peterk87 opened on Jan 21, 2020
  1

• Permission denied for docker pull

  question
  nlapier2/Metalign#14 · Filter by author Anto007 opened on Jan 21, 2020
  6

• Create tutorial scripts that show common use cases

  enhancement
  nlapier2/Metalign#12 · Filter by author dkoslicki opened on Dec 12, 2019
  2