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Refactor: Codebase cleanup, migration optimizations, and API enhancements - #62

Merged

Genarito merged 14 commits into

devfrom

Sep 25, 2026

Merged

Refactor: Codebase cleanup, migration optimizations, and API enhancements#62
Genarito merged 14 commits into
devfrom
code-clean

Commits on Jul 30, 2026
- feat: add optional ref_database parameter to methylation endpoints for Gencode and UCSCRefGene support
  mauri101-Ar
  committed
  84fbd71
Commits on Aug 7, 2026
Commits on Aug 8, 2026
- perf: optimize database migration performance and memory usage by implementing bulk processing for EPIC and miRTarBase datasets
  mauri101-Ar
  committed
  dff9a09
Commits on Aug 10, 2026
- refactor: consolidate data loading into a single migration with pre-flight checks, unified logging, and optimized bulk creation processes.
  mauri101-Ar
  committed
  47a7d7b
Commits on Aug 14, 2026
- refactor: add alias resolution and miRNA/gene fields to API responses and optimize bulk migration performance
  mauri101-Ar
  committed
  9d0cb4f
- refactor: squash all migrations into a single initial state and remove dead processor code
  mauri101-Ar
  committed
  fcfc60a
Commits on Aug 21, 2026
- feat: add methylation genes translator endpoint and update database documentation
  mauri101-Ar
  committed
  099776a
Commits on Sep 11, 2026
- refactor: remove methylation genes translator endpoint and add GENCODE v41 support with testing guidelines
  mauri101-Ar
  committed
  93525b9
- docs: remove cleanup summary documentation
  mauri101-Ar
  committed
  f203058
Commits on Sep 23, 2026
- fix: update PostgreSQL service restart policy to always. Clean .gitignore file
  mauri101-Ar
  committed
  86113e1