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Feat/sdk modulector - #104
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Replaced direct Modulector HTTP calls with modulector-sdk wrappers in `MRNAService` and updated all related consumers (`api_service`, `biomarkers`, `molecules_details`, and assistant tools). Added dedicated SDK-backed methods for miRNA/methylation lookup, interactions, diseases, drugs, and code/site search, plus paginated response normalization and safer fallbacks. Also introduced `MODULECTOR_BASE_URL` settings, added `modulector-sdk` dependency, updated MCP server command args for BioMCP, and fixed a null-response edge case in biomarker gene lookup.
Enable a dedicated `modulector` MCP server in `mcp_servers.json` and remove the in-process miRNA helper tools from `tools.py` (search/details/targets/diseases/drugs), along with their registration. This centralizes miRNA and related biological lookups through the external Modulector MCP integration instead of local assistant wrappers.
Genarito
requested changes
Aug 1, 2026
| @@ -168,6 +168,8 @@ def find_genes_from_request(request: Request) -> List[Dict]: | |||
| """ | |||
| genes_found = global_mrna_service.get_bioapi_service_content('gene-symbols-finder', | |||
Replace custom BioAPI request logic with bioapi-sdk wrappers across services and views to simplify interactions and maintain consistency. Deprecate internal BioAPI request helpers and remove their usage across the codebase. Update requirements.txt to include bioapi-sdk as a dependency.
Replace custom BioAPI request logic with bioapi-sdk wrappers across services and views to simplify interactions and maintain consistency. Deprecate internal BioAPI request helpers and remove their usage across the codebase. Update requirements.txt to include bioapi-sdk as a dependency.
Genarito
requested changes
Sep 19, 2026
| }, | ||
| is_paginated=False, | ||
| method='post' | ||
| # TODO: use gene_ids=gene_ids, filter_type=filter_type, ontology_type=ontology_types, |
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Resolver TODO! Quedó todo hardcodeado. Verificar que no esté pasando en otro lado
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