Repositories list

• MetaCoAG

  Public
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

  metagenomicsbinningcontigs+ 1

  metagenomicsbinningcontigsassembly-graphs

  Python

  •

  GNU General Public License v3.0

  •77 forks•6969 stars•77 issues•00 pull requests•Updated Aug 28, 2026Aug 28, 2026

• gbintk

  Public
  🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

  bioinformaticsmetagenomicsassembly-graph+ 2

  bioinformaticsmetagenomicsassembly-graphcontigsmetagenomic-binning

  Python

  •

  GNU General Public License v3.0

  •66 forks•2424 stars•00 issues•00 pull requests•Updated Jun 25, 2026Jun 25, 2026

• graphbin-viz

  Public
  🌐🧬 GraphBin-Viz: Interactive Visual Analytics for Exploring Graph-based Metagenomic Binning

  JavaScript

  •

  GNU General Public License v3.0

  •22 forks•77 stars•00 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• VStrains

  Public
  VStrains is a de novo approach for reconstructing strains from viral quasispecies.

  viral-metagenomicsshort-reads

  viral-metagenomicsshort-reads

  Python

  •

  MIT License

  •66 forks•2424 stars•11 issue•00 pull requests•Updated Feb 22, 2026Feb 22, 2026

• GraphBin2

  Public
  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

  metagenomicsbinningcontigs+ 2

  metagenomicsbinningcontigsassembly-graphsoverlapped-binning

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •44 forks•3737 stars•77 issues•00 pull requests•Updated Oct 24, 2025Oct 24, 2025

• GraphBin

  Public
  ✨🧬 Refined binning of metagenomic contigs using assembly graphs

  metagenomicsbinningassembly-graph+ 2

  metagenomicsbinningassembly-graphlabel-propagationcontigs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1010 forks•9898 stars•55 issues•11 pull request•Updated Mar 6, 2025Mar 6, 2025

• metagenomic_binning_review

  Public
  Code used to analyse and plot metadata of metagenomic binning tools

  Jupyter Notebook

  •

  MIT License

  •11 fork•1414 stars•00 issues•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• ConDiGA

  Public
  🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics

  Python

  •

  MIT License

  •22 forks•77 stars•33 issues•00 pull requests•Updated Jul 7, 2024Jul 7, 2024

• metagenomic-database-utilities

  Public
  Scripts used to create metagenomic databases for metaproteomic analysis

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 6, 2024Feb 6, 2024