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ozkilim/README.md

Hey, I'm Oz πŸ‘‹

I make pathology slides talk, and big models run on small computers.

πŸ”¬ Postdoctoral Research Fellow @ CHIP β€” Boston Children's Hospital / Harvard Medical School βš™οΈ CTO @ Tropiflo πŸ“š Google Scholar


πŸ”¬ By day β€” computational pathology

Predicting cancer outcomes from whole-slide images: foundation models, multiple-instance learning, and multi-center survival analysis.

  • PATH-ORACLE-INFERENCE β€” weights, cutoffs & inference for our LUAD progression models (TITAN embeddings Β± a 46-gene RNA signature β†’ risk)
  • SlideCrush β€” patch & embed WSIs with every histopathology ViT foundation model in one package
  • onco_run β€” model-agnostic WSI inference runner in a single Docker image; collaborators just ./run.sh
  • KAIROS & PRELUDE β€” international consortia: platinum response in ovarian cancer, and early-stage lung adenocarcinoma relapse

πŸŒ™ By night β€” side quests

  • 🐦 colibri β€” hacking on a pure-C MoE engine that streams experts from disk. Current experiment: a ~1T-parameter model running off a spinning hard drive
  • πŸ–₯️ sovereign-mesh β€” interactive simulator: wire your office's idle Macs into one machine big enough for frontier open-weight models
  • πŸŽ™οΈ voice-claude β€” "Hey Jarvis" β†’ talk to your coding agent through a Bluetooth headset, Whisper running on the Apple Silicon GPU
  • ☁️ runway β€” see your cloud credits burning down without leaving your coding agent
  • πŸ“ˆ polymarket-kalshi-btc-arbitrage-bot β€” does what it says on the tin

πŸ¦– Fossil record

Proof I'll build anything once: a speed-dating site named DinosaurDating, a fridge app that nags you about expiring food, a pandemic-era CNN that livestream-detects you touching your face, and a GNN for pigeons.


Currently obsessed with: how much frontier-model inference you can squeeze out of hardware nobody wanted. Ask me about R(3,3,3,3). 🎨

Pinned Loading

  1. RBD-AlphaFold2-structures-and-phenotypic-information RBD-AlphaFold2-structures-and-phenotypic-information Public

    Forked from csabaiBio/RBD-AlphaFold2-structures-and-phenotypic-information

    Scripts needed to reproduce results from the paper "SARS-CoV-2 RBD deep mutational AlphaFold2 structures carry phenotypic information"

    Jupyter Notebook

  2. biological_community_detection biological_community_detection Public

    Comparison of community detection algorithms on synthetic and cortical networks.

    Jupyter Notebook

  3. CBIS_DDSM_pre_processing CBIS_DDSM_pre_processing Public

    Some scripts to clean up the raw CBIS_DDSM dataset for machine leaning use.

  4. Medical-Image-Captioning-on-Chest-X-rays Medical-Image-Captioning-on-Chest-X-rays Public

    Forked from agno-nymous/Medical-Image-Captioning-on-Chest-X-rays

    Medical Image captioning on chest X-rays project for ELTE data mining course.

    Jupyter Notebook

  5. pidgeon_GNN pidgeon_GNN Public

    Jupyter Notebook