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Guideline updates 2026-10-01: biorxiv, cell, cell_genomics, cell_systems, iclr_2027 #8

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Merged
josephrich98 merged 6 commits into from
Oct 2, 2026
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Guideline updates 2026-10-01: biorxiv, cell, cell_genomics, cell_systems, iclr_2027 #8

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54a06a3
requirements: biorxiv: No edit needed: FAQ diff only adds a TOC line …
josephrich98 Oct 1, 2026
c2f778e
requirements: cell: Add PSD/PNG to Cell figure formats; drop MP4 rule…
josephrich98 Oct 1, 2026
b57f088
requirements: cell_genomics: Add PSD and PNG to Cell Genomics accepte…
josephrich98 Oct 1, 2026
e9a91ab
requirements: cell_systems: Add PSD and PNG to Cell Systems accepted …
josephrich98 Oct 1, 2026
a0d1d53
requirements: iclr_2027: No edit needed: diffs only drop "11:59 PM" a…
josephrich98 Oct 1, 2026
ad3b3f4
guideline baselines as of 2026-10-01
josephrich98 Oct 1, 2026
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24 changes: 15 additions & 9 deletions paperpush/manuscript_requirements.json
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Expand Up @@ -246,7 +246,7 @@
"https://www.biorxiv.org/about/FAQ",
"https://www.biorxiv.org/about-biorxiv"
],
"retrieved": "2026-09-23",
"retrieved": "2026-10-01",
"manuscript": {
"formats": [
".docx",
Expand Down Expand Up @@ -1738,7 +1738,7 @@
"https://www.cell.com/pb-assets/journals/EM/Master%20Final%20Files%20Checklists/Cell%20Final%20File%20Checklist.docx",
"https://www.cell.com/pb-assets/journals/research/cell/methods/Methods_Guide_general-1724873926937.pdf"
],
"retrieved": "2026-09-23",
"retrieved": "2026-10-01",
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Expand Down Expand Up @@ -1943,6 +1943,8 @@
".pdf",
".eps",
".jpg",
".psd",
".png",
".cdx"
],
"vector_formats": [
Expand All @@ -1968,7 +1970,7 @@
"At initial submission, figures may be in a wide variety of formats/sizes/resolutions and may be interspersed with the text or uploaded as separate files; keep files small (1-2 MB) where possible.",
"For production, main figures must be uploaded individually as high-resolution files (not embedded in the manuscript), with all panels of a figure on a single page; each figure should be no larger than about 6.5 x 8 in (16.5 x 20 cm), with a 1.5-column width of 11.4 cm (114 mm) in addition to the 1- and 2-column widths.",
"Resolution at intended print size: color/grayscale figures at least 300 dpi, black-and-white (non-line-art) figures at least 500 dpi, line-art figures at least 1,000 dpi.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, and CDX are also accepted via Editorial Manager; AI (Adobe Illustrator) source files are accepted only for Leading Edge figures in Cell.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, PSD, PNG, and CDX are also accepted via Editorial Manager; AI (Adobe Illustrator) source files are accepted only for Leading Edge figures in Cell.",
"Line weights should be 0.5-1.5 pt; embed all fonts and use only Arial; flatten layers before submission (except Leading Edge papers).",
"Cell Press does not permit generative AI/AI-assisted tools to create or alter research or data images.",
"A graphical abstract is required for Cell (not optional, unlike Cell Systems/Current Biology/Patterns/Neuron/Newton): exact square, 1200 x 1200 px at 300 dpi, single panel; preferred formats TIFF/PDF/JPG.",
Expand Down Expand Up @@ -2000,7 +2002,7 @@
"No strict cap on the number of supplemental items; the recommendation is not to exceed 20 supplemental figures per paper (combine related items into multi-page figures if over).",
"Supplemental figures/tables/schemes are titled 'Figure S1', 'Table S1', etc. (not 'Supplemental Figure 1').",
"Supplemental tables exceeding 3 pages must be provided as standalone Excel (or similar) files; datasets/code should use non-proprietary formats (.csv, .txt) labeled 'Data S1', etc.; individual standalone SI files must not exceed 500 MB.",
"Video files (.mp4 preferred) and audio may be included; STAR Protocols videos must be landscape MP4.",
"Video files (.mp4 preferred) and audio may be included; STAR Protocols videos must be in landscape mode.",
"A brief Supplemental Information index (one-line description of each file) must appear in the main text under the heading 'Supplemental information'."
]
},
Expand Down Expand Up @@ -2049,7 +2051,7 @@
"https://www.cell.com/pb-assets/journals/EM/MasterFFCs/CELSFFC-1766175470697.pdf",
"https://www.cell.com/pb-assets/journals/research/cell-systems/do-not-delete/CSformatting-1666007786657.pdf"
],
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Expand Down Expand Up @@ -2213,6 +2215,8 @@
".pdf",
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"vector_formats": [
Expand All @@ -2238,7 +2242,7 @@
"Cell Systems is a figure-driven journal; the scientific argument should be made through the figures and their legends.",
"For production, main figures must be uploaded individually as high-resolution files (not embedded in the manuscript), with all panels on a single page; each figure should be no larger than about 6.5 x 8 in (16.5 x 20 cm), with a 1.5-column width of 11.4 cm (114 mm) in addition to 1- and 2-column widths.",
"Resolution at intended print size: color/grayscale at least 300 dpi, black-and-white (non-line-art) at least 500 dpi, line art at least 1,000 dpi.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, and CDX are also accepted via Editorial Manager.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, PSD, PNG, and CDX are also accepted via Editorial Manager.",
"Line weights should be 0.5-1.5 pt; embed all fonts and use only Arial; flatten layers before submission.",
"Cell Press does not permit generative AI/AI-assisted tools to create or alter research or data images.",
"A graphical abstract is optional for Cell Systems (unlike most other Cell Press journals): square, 1200 x 1200 px at 300 dpi, single panel; preferred formats TIFF/PDF/JPG.",
Expand Down Expand Up @@ -2318,7 +2322,7 @@
"https://www.cell.com/pb-assets/journals/EM/MasterFFCs/XGENFFC-1750589326387.pdf",
"https://els-jbs-prod-cdn.jbs.elsevierhealth.com/pb-assets/journals/research/cell-genomics/cell-genomics_IfA-1592223534027.pdf"
],
"retrieved": "2026-09-23",
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Expand Down Expand Up @@ -2447,6 +2451,8 @@
".pdf",
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Expand All @@ -2471,7 +2477,7 @@
"notes": [
"For production, main figures must be uploaded individually as high-resolution files (not embedded in the manuscript), with all panels of a figure on a single page; each figure should be no larger than about 6.5 x 8 in (16.5 x 20 cm), with a 1.5-column width of 11.4 cm (114 mm) in addition to 1- and 2-column widths.",
"Resolution at intended print size: color/grayscale at least 300 dpi, black-and-white (non-line-art) at least 500 dpi, line art at least 1,000 dpi.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, and CDX are also accepted via Editorial Manager.",
"TIFF and PDF are the preferred production formats; EPS (vector), JPEG, PSD, PNG, and CDX are also accepted via Editorial Manager.",
"Line weights should be 0.5-1.5 pt; embed all fonts and use only Arial; flatten layers before submission.",
"Figures with micrographs require scale bars; figures with pooled data/error bars must define the measure (e.g., mean +/- SEM) in the legend.",
"Digitally spliced gel/blot images must indicate the deletion position (line or space) and explain the manipulation in the legend or STAR Methods; composite images must be flagged as such.",
Expand Down Expand Up @@ -4908,7 +4914,7 @@
"https://iclr.cc/Conferences/2027/CallForPapers",
"https://blog.iclr.cc/2026/09/02/submission-policies-for-iclr-2027/"
],
"retrieved": "2026-09-23",
"retrieved": "2026-10-01",
"manuscript": {
"formats": [
".pdf"
Expand Down
36 changes: 18 additions & 18 deletions scripts/guideline_fingerprints.json
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Expand Up @@ -20,14 +20,14 @@
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Expand Down Expand Up @@ -180,9 +180,9 @@
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Expand All @@ -200,9 +200,9 @@
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Expand Down Expand Up @@ -250,9 +250,9 @@
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Expand All @@ -265,9 +265,9 @@
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