DOI validation as suggested in #398

[nevrome]

When merged this should solve #398.

With these changes validating the community-archive yields this output:

[Info]    Validating: .
[Info]    Checking base directories...
[Info]    Searching POSEIDON.yml files...
[Info]    213 found
[Info]    Checking Poseidon versions...
[Info]    Initializing packages...
[Warning] The .ssf file in the package 2024_Gretzinger_Oakhurst features Poseidon_IDs that are not in the package: OAK004.B
[Warning] In file 2026_Ghalichi_IAEliteNomads/2026_Ghalichi_IAEliteNomads.bib in entry GhalichiSciAdv2026: DOI looks suspicious and may not be valid (10.XXXX/ExampleJournal.47.777)
[Warning] In file 2024_Ghalichi_Caucasus/2024_Ghalichi_Caucasus.bib in entry WangNatureCommunications2019: No DOI
[Warning] In file 2016_Mallick_SGDP1240K_diploid_pulldown/LITERATURE.bib in entry MeyerScience2012: No DOI
[Warning] Value anomaly in ./2020_Ning_China/ENAtable.ssf in line 39:
[Warning] read_count is set to -1, which indicates a missing value.
[Warning] In file 2021_PattersonNature/sources.bib in entry LipsonNature2017: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry MathiesonNature2015: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry MathiesonNature2018: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry NarasimhanPattersonScience2019: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry OlaldeNature2018: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry OlaldeScience2019: No DOI
[Warning] In file 2021_PattersonNature/sources.bib in entry HarneyCheronetGenomeResearch2021: No DOI
[Warning] The .ssf file in the package 2021_Yaka_Anatolia features Poseidon_IDs that are not in the package: Ash033.SG
[Info]    Packages loaded: 213
[Warning] For packages below Poseidon v3.0.0 (poseidonVersion) values in the .janno columns Endogenous and Damage were rescaled from percent (0-100) to fractions (0-1).
[Info]    Validation passed

[codecov]

Codecov Report

❌ Patch coverage is 88.00000% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 52.48%. Comparing base (58d10f8) to head (ba694ec).

Files with missing lines	Patch %	Lines
src/Poseidon/Core/BibFile.hs	86.95%	2 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #409      +/-   ##
==========================================
+ Coverage   52.36%   52.48%   +0.12%     
==========================================
  Files          37       37              
  Lines        6065     6085      +20     
  Branches      648      649       +1     
==========================================
+ Hits         3176     3194      +18     
- Misses       2241     2242       +1     
- Partials      648      649       +1     

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[stschiff]

Great to have this. I'm not following everything, see comments, but I also trust you, and my confusion relates only to the golden tests... so good to merge as I'm sure you know what you're doing.