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RCAC Bioinformatics

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  1. helixforge helixforge Public

    Evidence-based refinement of Helixer deep-learning gene annotations. The prediction is the backbone; RNA-seq and protein evidence refine it only where they outscore it.

    Python 4

  2. bsaseq bsaseq Public

    Bulk Segregant Analysis for QTL mapping from pooled whole-genome sequencing data.

    Python 3

  3. genome-assembly genome-assembly Public

    Genome Assembly: Hands-on Training

    1 1

  4. rcac-bioinformatics.github.io rcac-bioinformatics.github.io Public

    RCAC bioinformatics documentation

    R 1

  5. genome-annotation genome-annotation Public

    Genome Annotation: Hands-on Training

    R

  6. maize-genomics maize-genomics Public

    R

Repositories

Showing 10 of 11 repositories
  • mitoforge Public

    Assemble, circularise and annotate animal mitochondrial genomes from PacBio HiFi or Illumina paired-end reads

    rcac-bioinformatics/mitoforge's past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 23, 2026
  • singlecell-rnaseq Public
    rcac-bioinformatics/singlecell-rnaseq's past year of commit activity
    0 0 0 0 Updated Sep 22, 2026
  • rnaseq-analysis Public

    Repository for hands-on introduction to RNA-seq data analysis using Bioconductor packages on high-performance computing (HPC) systems at RCAC, Purdue University

    rcac-bioinformatics/rnaseq-analysis's past year of commit activity
    0 0 0 0 Updated Sep 22, 2026
  • helixforge Public

    Evidence-based refinement of Helixer deep-learning gene annotations. The prediction is the backbone; RNA-seq and protein evidence refine it only where they outscore it.

    rcac-bioinformatics/helixforge's past year of commit activity
    Python 4 MIT 0 0 0 Updated Jul 10, 2026
  • r-bioconductor Public
    rcac-bioinformatics/r-bioconductor's past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jul 9, 2026
  • bsaseq Public

    Bulk Segregant Analysis for QTL mapping from pooled whole-genome sequencing data.

    rcac-bioinformatics/bsaseq's past year of commit activity
    Python 3 MIT 0 0 0 Updated Jul 9, 2026
  • rstudio-bioc-ood Public
    rcac-bioinformatics/rstudio-bioc-ood's past year of commit activity
    Shell 0 0 0 0 Updated May 27, 2026
  • rcac-bioinformatics.github.io Public

    RCAC bioinformatics documentation

    rcac-bioinformatics/rcac-bioinformatics.github.io's past year of commit activity
    R 1 0 0 0 Updated Apr 24, 2026
  • maize-genomics Public
    rcac-bioinformatics/maize-genomics's past year of commit activity
    R 0 0 0 0 Updated Mar 24, 2026
  • genome-annotation Public

    Genome Annotation: Hands-on Training

    rcac-bioinformatics/genome-annotation's past year of commit activity
    R 0 0 0 0 Updated Mar 24, 2026
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