Put the DeltaSignal UI behind a per-deployment flag (and update the branch) - #198

Merged

adamjohnwright merged 139 commits into

feat/deltasignal-uifrom

feat/deltasignal-toggle

Sep 14, 2026

Commits on Aug 13, 2026

update env variables.
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e45201b
For Literature display, if authorName, use this, otherwise use author.
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0077ae8

Commits on Aug 14, 2026

wip
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a56a198

Commits on Aug 18, 2026

update
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Merge branch 'main' into curator-tool
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86eb582

Commits on Aug 19, 2026

Updates to enviornement and manual editing of the publication component.
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feat(render): produce GIF and PowerPoint from the site's own renderer

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f4d7922
update package.json with curator website script.
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18162a5

Commits on Aug 20, 2026

feat(download): take GIF and PowerPoint from the render service

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7f8d5de
fix(render): draw the GIF at a size its labels can be read at

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9f1aa39
fix(render): make a renderer change reach a browser that already has a figure

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ec7761b
fix(ci): let knip see the render tooling, and make the export theme explicit

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0f13ce3
refactor(render): read the container's dependencies from the root package.json

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f66f6d0
fix(render): illustrations export standalone, and drop the URL version stamp

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28620c4
feat(export): make the animated SVG's timeline clickable (#141)

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e6264da
feat(reacfoam): signify flagging with a border rather than a fill (#140)

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4c59f99
refactor: make revealing the selected thing a directive (#137)

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0f12416
docs(curators): record what to check from this round

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5db7258
feat(idg): port the IDG protein-to-pathways search (/idg)

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94e3457
fix(serve): say "rebuilding" instead of throwing ENOENT mid-build

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e486406
fix(idg): filter by functional interaction score, and show the distribution

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5e3b325
feat(idg): show Target Development Level, and accept lower-case symbols

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f029931
feat(idg): add the portal's three plots, and match its defaults (#idg)

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fix(idg): drop an unused type import

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a284d80
test(idg): teach the e2e suite about the new shortcut and page

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feat(idg): expandable rows with the pathway's description and hierarchy

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feat(idg): list the interacting genes, with a CSV, and link out to Pharos

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a8d4588
feat(idg): download the pathway list as a CSV

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4664a67
fix(render): run the container's browser from a path its user can read

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c23ff37
test: start turning the release checklist into a suite

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2c7c231
docs(testing): correct three rows the last commit claimed were covered

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test: cover every top-level pathway and the interactor overlay

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8beb284
fix(diagram): let a reaction's input edges reach the reaction (R-HSA-6805479)

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87af84b
fix(analysis): make tissue enrichment reachable by the analysis service

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feat(detail): a reaction's downloads live with its figure, drawn by our renderer

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a03b401
fix(detail): the data exports read as a document, not as stray braces

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b64efb0
fix(idg): a pathway link opens with the interactors overlaid

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98a4a72
fix(download): the catalogue points at files that exist, in the release we serve

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a699164
fix(icons): icons come from the release bucket, not from the dev backend

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84b8f62

Commits on Aug 21, 2026

test(analysis): what an analysis is for, not just that its wizard opens

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c1bd727
fix(diagram): a node with no graph entry no longer blanks the whole diagram

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d651da6
test(detail): the contents of the panels, not just their presence

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0c0d063
fix(content): a page that names a release gets the one we are serving

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27c503b
feat(news): import announcements from the current site, verbatim

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dd35f6c
build: stage content as part of the build, and check the PNG tiers differ

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d1e2c83
feat(figures): take figures from the release bucket, falling back to the origin

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54c7d36
fix(figures): address figures outside the release, now that they are published

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aeebe04
test: close the testing queue, and draw the pathway thumbnail with our renderer

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0c08783
test(serve-prod): cover the server that actually serves beta

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009b64b
build(deps): express 4.18.2 -> 4.22.2 (dependabot #134)

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0857e9e
build(deps-dev): playwright 1.58.2 -> 1.62.1, vitest 3.2.4 -> 3.2.7 (dependabot #129)

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f850352
build(deps): Tina 3.12 and its CLI, which is where the criticals actually were

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666acfb
docs(curators): where to look on beta, and what a correct result looks like

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22da00f
fix(detail): the frame fits its column, the charts fit their box, BioPAX is one link

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00960cb
test(homepage): don't make the suite depend on four university websites

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ci: shard the e2e suite, which outgrew a single runner

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eded1b0
test: skip the reaction-diagram specs where the backend cannot serve one

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test: skip the icon-library check where the backend has no icon library

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11ebf62
test(diagrams): walk the top-level pathways three at a time, with room to draw

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aab13c4
test: split the suite in two -- is the code right, is the release right

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e4201f6

Commits on Aug 22, 2026

docs(curators): BioPAX is one link, so stop describing two

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cbd4024
fix(download): one BioPAX in the browser's panel too, Level 3

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docs: say what the 'newly added pathway' check actually asks

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381a48b
docs: audit both curator documents against reality

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a7e0c10
docs: DisGeNet is not being ported, and /tag/release is not a missing page

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e231efb
docs: merge the duplicate curator document back into CURATOR-REPORT.md

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e5680e6
docs(curators): a completeness pass over what we hand them

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fix(release-calendar): cards that look clickable now are, and the rest do not

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0796f06
test: narrow the href instead of asserting it

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115015d

Commits on Aug 31, 2026

Fixed the instance count at the top of the data-schema page.
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7269669

Commits on Sep 2, 2026

Fix the count of instances shown.
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2d845fd

Commits on Sep 3, 2026

Merge branch 'main' of https://github.com/reactome/WebsiteAngular into curator-tool
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build fix.
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stash.
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8289afd

Commits on Sep 4, 2026

feat(chat): point the homepage shortcut at the chatbot, and proxy it there

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753ed42
fix(analysis): a PADOG result no longer blanks every view at once

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c9efc88
fix(analysis): show the same resource production does

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13a0a53
fix(analysis): the diagram marks the same entities the table counts

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43752ba
build: resync the lockfile so npm ci can install again

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3585096
test: a probe that cannot reach the backend is not proof the feature is absent

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style: run prettier over the files the curator-tool merge left unformatted

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5d9ada6
fix(config): never fall back to another deployment's services

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cea8913
fix(env): the public build stops pointing at the curator host

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f4ca930
fix(curator): the curator build names its own backend, and compiles again

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a906f03
fix(env): point every non-production environment back at dev, and say so

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4e166e1
fix(env): development builds select development, and an unknown name is refused

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243dc58
refactor(config): a deployment is one row, naming its backend and its UI

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d7736e8
fix(config): the PathwayBrowser project stopped pointing at deleted files

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a61383e
fix(env): a site talks to itself again, and one name means one deployment

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96e1962
docs: say why the public deployments resolve their own origin

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ca113a0
fix(analysis): tissue analysis works again on the sites that have a digester

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feat(analytics): the whole site reports, and each deployment to its own property

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fix(analytics): only reactome.org reports to Google

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fix(env): the published artifact names beta, because a bucket has no backend

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docs: say what a fresh clone needs to actually run

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fix(ehld): stop revealing an analysis box that cannot be labelled

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docs(export): say why a selector clause that matches nothing is kept

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fix(env): diagrams come from the bucket on every main deployment again

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refactor(env): assets come from the bucket unless a deployment opts out

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0d82fcf
fix(test): a service that is not running is absent, a timeout still is not

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2069e77
build: run CI's checks before the push, not after the email

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639e988
fix(test): the probe asks one question, not a list of status codes

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2d118e0
docs: say where each build is published, and correct d823baa's evidence

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d85534b
feat(render): describe a diagram as shapes, for exporters that draw shapes

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build: a typecheck that cannot report success by accident

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80dcc62
feat(pptx): a slide made of shapes, not a picture of one

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b1af460
fix(render): invalidate the cache the new PowerPoint export replaces

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docs(render): say how the service is actually deployed

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test(downloads): ask the slide whether it holds shapes

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docs(preflight): say what fast mode cannot tell you

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79b5db4
fix(pptx): draw inhibition as inhibition, not as activation (#169)

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b326169
fix(diagram): keep trivial molecules visible while something is flagged (#170)

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fix(analysis): say which component your data hit, so it can be read (#171)

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14a200e
fix(routing): open the pathway a legacy news link points at (#172)

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5eeef11

Commits on Sep 5, 2026

chore(viewport): drop the compare-form scaffold that was never written (#174)

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4e332d0

Commits on Sep 9, 2026

fix(pptx): draw the glyph bodies, not empty boxes (#176)

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8df040f
fix(pptx): clip a framed export once, so no shape can escape it (#177)

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2cfbb63
feat(downloads): say the file is being made, and never save a failure (#178)

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c3c27ce
feat(downloads): the same feedback on the detail page's exports (#179)

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9db6632
fix(downloads): give up eventually, and keep one implementation of this (#180)

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db08e6e
fix(hierarchy): hold the tree's place when a deep sub-event is clicked (#181)

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a47c95f
fix(routing): open what the release announcement links to, on a stable id (#182)

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22bc993
fix(routing): let a reader come back from a legacy link (#183)

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550fbfb
fix(routing): let Back leave the pathway browser (#184)

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6bb5cf7
fix(routing): decide "replace or add" from the URL, not from a flag (#185)

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ce35363
fix(routing): ask the path whether this is a content page, not the whole URL (#186)

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eda9f58

Commits on Sep 10, 2026

fix(ci): let the CMS guard allow the format the CMS actually writes (#188)

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489cf1d
docs(e2e): say why the dbId fragment is still tested (#189)

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3f2ce76
content(news): link pathways by stable id, not by dbId (#187)

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ccd4224
fix(ci): judge a rename's source too, and correct the link counts (#190)

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20435dc
chore: adopt Spec Kit, with a constitution that says what it cost (#192)

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spec(interactors): confidence filtering and download (#193)

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9367c60
fix(routing): open what a legacy settings-only fragment asked for (#191)

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dbb25c6
test(downloads): make "working" a state the test cannot miss (#194)

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test(flagging): read an opacity only at the zoom it was asked for (#196)

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3ef125e
chore: stop tracking generated content, and generate it before serving (#195)

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b2fdb91
chore: re-land two review follow-ups that missed their merges (#197)

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c28bbac
Merge main into the DeltaSignal branch, and put the UI behind a flag

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77bde8b

Commits on Sep 14, 2026

test(deltasignal): name the profile in both cases, not just one

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