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  1. sidechain sidechain Public

    Predicting how a cell's transcriptome shifts when a gene is silenced: a solo entry to the Virtual Cell Challenge 2026, built in the open.

    Python 5

  2. BirolLab/NanoSim BirolLab/NanoSim Public

    Nanopore sequence read simulator

    Python 313 67

  3. saberhq.github.io saberhq.github.io Public

    Source for my personal website and blog

    HTML

  4. BirolLab/ntEmbd BirolLab/ntEmbd Public

    Deep learning embedding for nucleotide sequences

    Python 20 2

  5. RBPSponge RBPSponge Public

    Forked from rbpsponge/RBPSponge

    R

  6. BioOptuna BioOptuna Public

    🧬 🧿 Optuna hyperparameter tuning template for Bioinformatics research use cases

    Python