Search results

CosMx Reader Incorrectly Assumes Image Dimension Order

Status: Open.

#403 In scverse/spatialdata-io;

· SFD5311 opened on Jun 4, 2026

Xenium Fails to read third party segmentation

Status: Open.

#402 In scverse/spatialdata-io;

· annasaax-rgb opened on May 29, 2026

Xenium transcript dask DataFrame has non-unique index; transcript_id is the natural unique key

xenium

Status: Open.

#397 In scverse/spatialdata-io;

· LucaMarconato opened on May 15, 2026

Handling of case-variant column names in CosMx data

Status: Open.

#393 In scverse/spatialdata-io;

· SFD5311 opened on Apr 28, 2026

filtered_counts_file parameter for cell-segmented matrices

visium-hd

Status: Open.

#390 In scverse/spatialdata-io;

· dennisdharmawan opened on Apr 8, 2026

Add Xenium Explorer GeoJSON import

Status: Open.

#385 In scverse/spatialdata-io;

· wlason opened on Mar 12, 2026

BMKS300

Status: Open.

#384 In scverse/spatialdata-io;

· ogandril opened on Mar 10, 2026

spatialdata.write fails on Xenium sdata in env with pandas 3.0.0

xenium

Status: Open.

#364 In scverse/spatialdata-io;

· EmielGeeraerts opened on Feb 3, 2026

Error reading Xenium data: morphology file missing

xenium

Status: Open.

#362 In scverse/spatialdata-io;

· enric-bazz opened on Feb 1, 2026

Error with spatialdata_io.xenium() reader

xenium

Status: Open.

#361 In scverse/spatialdata-io;

· enric-bazz opened on Jan 30, 2026

visium_hd reader: load_segmentations_only = False still loads segmentation results

Status: Open.

#359 In scverse/spatialdata-io;

· julienmortier opened on Jan 22, 2026

Anndata compatible version with spatialdata-io 5.1/5.0

Status: Open.

#346 In scverse/spatialdata-io;

· AtlasMaroc opened on Nov 18, 2025