Release/0.4.0 - #2

Merged

selcukorkmaz merged 22 commits into

mainfrom

Sep 18, 2026

Commits on Sep 16, 2026

feat!: linear-time derivation, classed conditions, split_spec 0.3.0 contract

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3a2b6a6
docs: quick start, FAQ, a real-data case study, and the corrected consumer seam

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6d45025
ci: run every skipped check, add perf and pkgdown workflows, release tooling

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fbd2f14
chore: release 0.4.0

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33f146a
fix: keep the graph_from_metadata examples inside the CRAN time limit

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b0280d6
docs: bring the four pre-existing vignettes up to the 0.4.0 contract

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3b5544e
docs: rewrite the quick start, and let a sample_id-only table build

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a18b53c
docs: make the leakage-aware workflow cover the whole 0.4.0 surface

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61d1eb0
docs: give the structure vignette the failure modes it was demonstrating

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826258b

Commits on Sep 17, 2026

docs: make the cross-language vignette verify what it claims

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dadcb13
docs: close the adapter cookbook's gaps against the 0.4.0 contract

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914bfba
docs: correct the GSE60424 case study against the data it ships

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b0dd4b7
chore: keep build artifacts out of the tarball and the repository

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708b65e
docs: rewrite the JOSS paper against the 2026 submission criteria

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3dcdcd2
docs: restructure the JOSS paper to match a published exemplar

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9af36bd
docs: correct the FAQ's performance claim and show the schema boundary

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c96d637
fix: drop the pkgdown site URL from DESCRIPTION for the CRAN submission

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01adbd1
docs: add cran-comments.md for the 0.4.0 submission

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ff5f204
docs: record the spell-check result in cran-comments

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fcf7b5e
docs: bring the AI disclosure up to JOSS policy, add COI and funding

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de7db7e
docs: add the ROR id and corresponding-author flag to paper.md

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0fec5c3
fix: give igraph's GML writer explicit node ids, and un-dangle two README links

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91a8203