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15th Jan 2026

This repository contains a workflow for illumina sequenced amplicon analysis and nanopore sequenced amplicon analysis.
This has originally been written for Anopheles but can be adapted to different species.

Sophie Moss, (amplicon python script updated from original which was written by Jody Phelan)

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This repository is for processing amplicon fastq files of anopheles mosquitoes to identify variants including SNPs and INDELs

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