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speciationgenomics
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About
Scripts for analysis used during the course
Activity
Custom properties
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98
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SLiM_neutral_expansion_loop.sh
SLiM_neutral_expansion_loop.sh
SLiM_plotting.R
SLiM_plotting.R
SLiM_run_population_contraction.sh
SLiM_run_population_contraction.sh
SLiM_run_population_expansion.sh
SLiM_run_population_expansion.sh
SLiM_run_recent_population_contraction.sh
SLiM_run_recent_population_contraction.sh
SLiM_run_stable_popsize.sh
SLiM_run_stable_popsize.sh
align_sort_loop.sh
align_sort_loop.sh
calculateAIC.sh
calculateAIC.sh
calculate_bam_coverage.sh
calculate_bam_coverage.sh
checkHetsIndvVCF.sh
checkHetsIndvVCF.sh
convertVCFtoEigenstrat.sh
convertVCFtoEigenstrat.sh
convert_vcf_to_geno.sh
convert_vcf_to_geno.sh
easysfs_conversion.sh
easysfs_conversion.sh
filter_vcf.sh
filter_vcf.sh
find_outliers_and_genes_all.R
find_outliers_and_genes_all.R
fsc-selectbestrun.sh
fsc-selectbestrun.sh
genomeScan.r
genomeScan.r
genome_wide_FST.sh
genome_wide_FST.sh
genome_windows.sh
genome_windows.sh
ldPruning.sh
ldPruning.sh
ld_decay_calc.py
ld_decay_calc.py
ld_pruning_pca.sh
ld_pruning_pca.sh
neutral_contraction.slim
neutral_contraction.slim
neutral_expansion.slim
neutral_expansion.slim
neutral_expansion_loop.sh
neutral_expansion_loop.sh
neutral_recentContraction.slim
neutral_recentContraction.slim
neutral_stable.slim
neutral_stable.slim
parallel_align.sh
parallel_align.sh
parallel_align_100k.sh
parallel_align_100k.sh
plotADMIXTURE.r
plotADMIXTURE.r
plotModel.r
plotModel.r
sample_vcf_create_stats.sh
sample_vcf_create_stats.sh
slidingWindow_plotting.r
slidingWindow_plotting.r
test.slim
test.slim
test1.slim
test1.slim
vcf2treemix.sh
vcf2treemix.sh
View all files
About
Scripts for analysis used during the course
Activity
Custom properties
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98
stars
Watchers
6
watching
Forks
63
forks
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