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MMAdeploy should support HTTP download of read files
EnhancementISSUE: Things to consider for later implementationISSUE: Things to consider for later implementationStatus: Open.#227 In ssi-dk/MMASeq;Ensuring long table generation by exporting the functionality outto the launcher.
ImplementationISSUE: Planned for implementationISSUE: Planned for implementationStatus: Open.#226 In ssi-dk/MMASeq;Serovar detector
ExternalISSUE: Related to external sources, sometime possibly to resolve but not always.ISSUE: Related to external sources, sometime possibly to resolve but not always.Status: Open.#224 In ssi-dk/MMASeq;Spades container issue
ExternalISSUE: Related to external sources, sometime possibly to resolve but not always.ISSUE: Related to external sources, sometime possibly to resolve but not always.Status: Open.#223 In ssi-dk/MMASeq;Add error catcher for wrongly formatted species configs
ImplementationISSUE: Planned for implementationISSUE: Planned for implementationStatus: Open.#198 In ssi-dk/MMASeq;Plasmidfinder v2 does not work with Python v3.12
ExternalISSUE: Related to external sources, sometime possibly to resolve but not always.ISSUE: Related to external sources, sometime possibly to resolve but not always.Status: Open.#193 In ssi-dk/MMASeq;MMAdeploy --test all modules
BugISSUE: Something isn't workingISSUE: Something isn't workingExternalISSUE: Related to external sources, sometime possibly to resolve but not always.ISSUE: Related to external sources, sometime possibly to resolve but not always.ImplementationISSUE: Planned for implementationISSUE: Planned for implementationStatus: Open.#183 In ssi-dk/MMASeq;Suggestion: Single download of all files/databases
EnhancementISSUE: Things to consider for later implementationISSUE: Things to consider for later implementationStatus: Open.#156 In ssi-dk/MMASeq;Download failure in
deploy_datasetshould probably exit programBugISSUE: Something isn't workingISSUE: Something isn't workingStatus: Open.#135 In ssi-dk/MMASeq;Provide warnings for unknown Modules and potentially unused keywords
ImplementationISSUE: Planned for implementationISSUE: Planned for implementationStatus: Open.#108 In ssi-dk/MMASeq;MLST db-dl script no longer supported
ExternalISSUE: Related to external sources, sometime possibly to resolve but not always.ISSUE: Related to external sources, sometime possibly to resolve but not always.ImplementationISSUE: Planned for implementationISSUE: Planned for implementationStatus: Open.#104 In ssi-dk/MMASeq;Add support MLST for E.coli and A.Baumanii (RAR)
EnhancementISSUE: Things to consider for later implementationISSUE: Things to consider for later implementationStatus: Open.#86 In ssi-dk/MMASeq;