Issues

• Assertion error in decoding

  stschiff/msmc2#69 · Filter by author trevorcousins opened on Feb 3, 2026
  1

• Impact of Switch Error on Population Divergence Time Estimation

  stschiff/msmc2#68 · Filter by author biozzq opened on Jan 18, 2026
  2

• issues with install

  stschiff/msmc2#67 · Filter by author jqjqyangjq opened on Aug 20, 2025

• Inquiry: Estimating Wild–Cultivated Divergence by RCCR

  stschiff/msmc2#65 · Filter by author doubleHwithT opened on Jun 9, 2025
  4

• different result for population and individual

  stschiff/msmc2#64 · Filter by author Elevensyl opened on Apr 30, 2025
  2

• Original estimate outside CI built with bootstrapping

  stschiff/msmc2#63 · Filter by author jaurbanChicago opened on Mar 1, 2025
  1

• about RCCR value > 1

  stschiff/msmc2#62 · Filter by author cnxiaobo94 opened on Jul 15, 2024
  2

• How many samples should be used in the analysis

  stschiff/msmc2#61 · Filter by author enluo211 opened on Apr 22, 2024
  5

• Baumwelch iteration not working

  stschiff/msmc2#59 · Filter by author Meer9234 opened on Nov 22, 2023
  2

• Question about plotting RCCR result and -s option in cross population analysis

  stschiff/msmc2#58 · Filter by author hungweichen0327 opened on Sep 26, 2023
  2

• Converting time boundaries into years

  stschiff/msmc2#56 · Filter by author rancilhac opened on Sep 21, 2023
  3

• Windows of equal recombination along the genome

  stschiff/msmc2#55 · Filter by author Luker121 opened on Aug 21, 2023
  1

• strange result about the estimated cross-coalescence rate

  stschiff/msmc2#54 · Filter by author liuqi-C opened on Aug 15, 2023
  1

• Haploid problem

  stschiff/msmc2#53 · Filter by author cfz1998 opened on Jun 29, 2023
  3

• using phased-vcf file as input for MSMC2

  stschiff/msmc2#52 · Filter by author Niloofar-Alaei opened on Jun 15, 2023
  2

• 2 vs. 4 haplotype results

  stschiff/msmc2#51 · Filter by author dmartche opened on Mar 15, 2023
  2

• Question about phasing and the cross-coalescence rate

  stschiff/msmc2#50 · Filter by author luisamarins opened on Mar 14, 2023
  1

• Population selections

  stschiff/msmc2#49 · Filter by author cnxiaobo94 opened on Feb 25, 2023
  5

• installation error

  stschiff/msmc2#48 · Filter by author cnxiaobo94 opened on Feb 21, 2023
  6

• MSMC2 -I Range violation

  stschiff/msmc2#47 · Filter by author bxZhang996 opened on Dec 28, 2022
  6