GitHub - thibgo/metabolightsbinarydatasets: A benchmark of metabolomics datasets from the MetaboLights database. All datasets have a binary predictive task, and contains at least 10 samples in each class.

The file mtbls-835-datasets.tar.xz (203 Mo) contains the datasets generated with this code (in 2024). It is hosted in 2 repositories (duplicates to ensure its availability in the future) :

Name		Name	Last commit message	Last commit date
scripts		scripts
README.md		README.md
datasets_description_dict.json		datasets_description_dict.json
step1_get_accessible_studies.py		step1_get_accessible_studies.py
step2_get_datafiles.py		step2_get_datafiles.py
step3_explore_datafiles.py		step3_explore_datafiles.py
step4_get_release_dates.py		step4_get_release_dates.py
studies_dict.json		studies_dict.json
studies_with_mfiles_but_no_raw_data.txt		studies_with_mfiles_but_no_raw_data.txt
studies_with_no_link_between_data_and_metadata.txt		studies_with_no_link_between_data_and_metadata.txt
studies_with_no_phenotype_to_predict.txt		studies_with_no_phenotype_to_predict.txt
studies_with_not_enough_data_points.txt		studies_with_not_enough_data_points.txt

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