Fiber photometry plotting

MATLAB scripts for plotting fiber photometry data.

Scripts

The repository contains the following scripts:

• FPplot_whole_trace.m: This script plots the entire recording trace and uses color blocks to indicate different behaviors.

• FPplot_PSTH.m: This script plots the average signal corresponding to a specific behavior. It offers three different options for visualizing the data.

• FPplot_video.m: This script generates an mp4 video like the following.

Input format

• The input signal file should be a .mat file with an array sig_norm, each row representing the signal for each brain region recorded.
• The annotation file should be a .txt file output from the behavior annotator (Piotr's MATLAB toolbox or the Python version by Xingjian Zhang).