charge-balance

An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.

Charge-balanced stimulation pulses for real stimulators (Intan, MCS, TDT): rounds biphasic pulses to the device's current and timing steps and finds exactly balanced ones.