This readme repository contains sample codes for executing steps within our manuscript
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Aug 13, 2023 - HTML
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cibersort
Here are 6 public repositories matching this topic...
Reproducible Pan-Cancer transcriptomic analysis pipeline evaluating immune cell infiltration (CIBERSORT) and immune checkpoint expression (PD-L1/CTLA-4) across TCGA cohorts.
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Aug 8, 2026 - Python
Bit-exact, multithreaded Python+Rust acceleration layer for IOBRpy — CIBERSORT, signature scoring, TPM, EPIC, quanTIseq, MCP-counter, ESTIMATE at 23–26× speed with bit-identical outputs
python rust benchmark bioinformatics computational-biology transcriptomics deconvolution bulk-rna-seq pyo3 tumor-microenvironment immuno-oncology maturin cibersort
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Sep 11, 2026 - Jupyter Notebook
Python CIBERSORT v1.04 implementation with a bundled Rust accelerator, reproducible tests, and benchmarks
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Aug 14, 2026 - Python
CRC bulk transcriptomics and tumor-immunology analysis integrating African ancestry, CMS1–4, DESeq2, xCell, CIBERSORT, and continuous ancestry gradients.
cms bioinformatics rna-seq computational-biology deseq2 tumor-microenvironment cancer-immunology colorectal-cancer cibersort genetic-ancestry xcellium
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Aug 5, 2026 - R
Deconvolucao imune de tumores gastricos com CIBERSORT
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Aug 4, 2026 - R
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