BSR-Based Allele Calling Algorithm
Epidemiological surveillance in Python
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
A Disease Outbreak Assistance system using machine learning and Artifitial Intelligence
metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples
In this repo. , "Cost Effective Lazy Forward Selection" Algorithm is implemented from scratch in python with only numpy library.
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Implementation of Complex Networks Algorithms
Federated, standards-compliant early-warning infrastructure. Fuses wastewater, clinical, and event data with hybrid SEIR+NN detection.
AI-powered district health command centre for Kalahandi, Odisha. PHC staff report by voice note or register photo → Gemini parses it → outbreak early-warning, medicine stock forecasting, expiry-waste redistribution on Google Maps. Built for Build with AI: Code for Communities (Track 3: Smart Health).
Outbreak signal detection with CDC EARS C1/C2/C3 and CUSUM on COVID-19 case data or any daily count series (Streamlit app).
AI-powered, offline-first healthcare surveillance for the Chittagong Hill Tracts: DBSCAN outbreak detection, multi-modal medical logistics, and on-device (Ollama gemma3:4b) + Gemini AI consultation. React + FastAPI.
AI pathology pre-reads for Kenyan pathologists, and outbreak alerts from confirmed results. A Flutter app for patients, doctors and pathologists powered by Firebase, Meta, Cerebral Valley, Baseten, Modal, and Fireworks; every AI draft is approved by a qualified person before it reaches anyone. Piloting across 1,447 Nairobi facilities.
R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.
HealthWatch is a mobile-first network that enables early outbreak detection by verifying local health observations in real time, transforming community data into actionable public health intelligence.
A machine learning system for predicting disease outbreaks using 30 years of WHO Disease Outbreak News (DON) data. Built with Python, Scikit-learn, XGBoost, and Folium. Models: Logistic Regression, Random Forest, XGBoost. Dataset source: WHO DON via Humanitarian Data Exchange (HDX) — United Nations OCHA.
Open-source disease surveillance, early warning, and response platform for Bangladesh, targeting DHIS2 and a customized dashboard.
Outbreak Detection Code (python and pyspark)
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