PertPy-based perturbation analysis pipeline using a CRISPR Perturb-seq dataset with reproducible Python scripts.
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Updated
Feb 8, 2026 - Python
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pertpy
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Runnable Perturb-seq analysis pipeline (guide assignment, Mixscape, pseudobulk-vs-per-cell DE, E-distance) on the Papalexi 2021 ECCITE-seq CRISPR screen — pertpy + scanpy
bioinformatics computational-biology single-cell differential-expression scanpy crispr-screen perturb-seq pertpy
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Updated
Jun 19, 2026 - Python
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