UW-Madison LOCI
Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri
- 40 followers
- Madison, WI, USA
- https://loci.wisc.edu
- @UWMadisonLOCI
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Repositories
Showing 10 of 156 repositories
- microscope_imageprocessing Public
- microscope_command_server Public
Socket-based command server for remote microscope control and QuPath integration
- flamingo-stitcher Public
Standalone light-sheet tile stitching (CLI + GUI) for Flamingo T-SPIM data, extracted from py2flamingo.
- qupath-extension-class-visibility Public
Show and hide QuPath objects by classification, built for highly multiplexed data. Ports the image.sc 'Show specific classes of objects' script to QuPath 0.7.
- tme-quant Public
- qupath-extension-cell-analysis-tools Public
Python-powered clustering and phenotyping for highly multiplexed imaging data in QuPath
- qupath-extension-dl-pixel-classifier Public
QuPath extension for deep learning pixel classification with Python training backend
- qupath-extension-qpsc Public
Java based extension for QuPath allowing control of a microscope through MicroManager
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