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1. lanl/PyBNF lanl/PyBNF Public

   An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Mo…

   Python 25 25

2. richardposner/RuleMonkey richardposner/RuleMonkey Public

   Rulemonkey a simulation engine for rule-based modeling

   C++ 2 2

3. lanl/bngsim lanl/bngsim Public

   An embeddable simulation library for biochemical reaction networks

   Python 3 5

4. lanl/ssys lanl/ssys Public

   Recast ordinary differential equations into canonical forms

   Python 1

5. lanl/litkit lanl/litkit Public

   Two-stage RAG pipeline for semantic search and question answering over scientific literature

   Python 2

6. lanl/chatty lanl/chatty Public

   A terminal UI chatbot for OpenAI-compatible endpoints

   Python 1