Issues

• Long Read Abundances and Unbinned

  wwood/CoverM#278 · Filter by author ttubb opened on Oct 17, 2025
  5

• CoverM Dereplication: Why Do .tsv Outputs Differ from cluster_definition.tsv?

  wwood/CoverM#273 · Filter by author sarehaghababaee opened on Sep 3, 2025
  3

• Any plan to support X-Mapper as an option for aligner?

  wwood/CoverM#271 · Filter by author ilnamkang opened on Sep 2, 2025
  1

• Why Read Count is zero, but Covered Bases is not zero?

  wwood/CoverM#265 · Filter by author jiaojiaoguan opened on Aug 7, 2025
  1

• Can CoverM contig be run in batches?

  wwood/CoverM#264 · Filter by author try-hunter opened on Aug 3, 2025
  1

• Relative abundance of unmapped is negative

  wwood/CoverM#256 · Filter by author LukCR opened on Jun 30, 2025
  2

• mutiple align reads and align parameter question question

  wwood/CoverM#255 · Filter by author Sung-hub opened on Jun 5, 2025
  1

• accumulated coverage across multiple samples

  wwood/CoverM#254 · Filter by author jianshu93 opened on May 29, 2025

• 0 read mapped with coverm genome relative abundance calculation.

  wwood/CoverM#252 · Filter by author Sung-hub opened on May 6, 2025
  1

• Could not find an available minimap2 executable.

  wwood/CoverM#246 · Filter by author Sung-hub opened on Mar 31, 2025
  1

• --contig-end-exclusion feature request

  wwood/CoverM#238 · Filter by author jianshu93 opened on Feb 15, 2025
  5

• "stream did not contain valid UTF-8"

  wwood/CoverM#232 · Filter by author pdenuyl2 opened on Dec 12, 2024
  2

• Calculating RPKM of metaT reads against a collection of MAGs

  wwood/CoverM#230 · Filter by author EMagadur opened on Nov 26, 2024
  5

• Add coverM to homebrew-bio

  wwood/CoverM#228 · Filter by author jianshu93 opened on Oct 12, 2024

• "relative_abundance" option was not provided in "contig" mode

  wwood/CoverM#211 · Filter by author microjishuai opened on May 3, 2024
  1

• Estimating the abundances of multiple viral genomes

  wwood/CoverM#210 · Filter by author asierFernandezP opened on Apr 6, 2024
  5

• [Enhancement] Improving Multi-sample Parallelisation Strategy

  wwood/CoverM#193 · Filter by author erfanshekarriz opened on Dec 23, 2023
  2

• [Documentation] Example tutorial walkthroughs and test data

  wwood/CoverM#192 · Filter by author erfanshekarriz opened on Dec 22, 2023

• How change the path of tmp files

  wwood/CoverM#190 · Filter by author microbial-cookie opened on Dec 12, 2023
  1

• What is the meaning about "--min-read-percent-identity "

  wwood/CoverM#189 · Filter by author weiguanyue opened on Nov 17, 2023
  1

• coverm contig Intermediate file

  wwood/CoverM#187 · Filter by author PonderLi opened on Nov 3, 2023

• defining an output file

  wwood/CoverM#184 · Filter by author Sabrin2020 opened on Aug 30, 2023
  7

• tpm and --exclude-supplementary

  wwood/CoverM#183 · Filter by author PonderLi opened on Aug 27, 2023

• paper cut: define clsuter methods possibilities properly

  wwood/CoverM#180 · Filter by author wwood opened on Aug 5, 2023

• Usage of --sharded

  wwood/CoverM#172 · Filter by author Rridley7 opened on Jun 18, 2023
  1