Issues

• MVP.Report SNP-density plot not respecting colour choices

  xiaolei-lab/rMVP#116 · Filter by author ckeeling opened on Mar 26, 2026

• Kinship in FarmCPU

  xiaolei-lab/rMVP#112 · Filter by author Lamoumni18 opened on Jun 13, 2025

• Error in SetRows.bm(x, i, value)

  xiaolei-lab/rMVP#111 · Filter by author tlyu23 opened on Apr 1, 2025

• effect allele

  xiaolei-lab/rMVP#110 · Filter by author GuidoGallo opened on Feb 6, 2025

• Does GLM function fit a logistic regression model when I use a binary phenotype like PLINK?

  xiaolei-lab/rMVP#109 · Filter by author AdamLiu98 opened on Jan 4, 2025
  1

• I did the analysis according to the standard procedure, and there was no problem in checking the format, but said that my number of rows and the number of columns did not match

  xiaolei-lab/rMVP#108 · Filter by author yuechengguang opened on Dec 29, 2024
  2

• How to calculate the heritability through the rMVP?

  xiaolei-lab/rMVP#107 · Filter by author LanLBio opened on Dec 19, 2024

• *** caught segfault *** address cause 'invalid permissions'

  xiaolei-lab/rMVP#106 · Filter by author SamMod1 opened on Dec 9, 2024
  3

• Define initial pseudo-QTNs

  xiaolei-lab/rMVP#105 · Filter by author Lamoumni18 opened on Dec 2, 2024

• trouble matching results with those from simple mixed model

  xiaolei-lab/rMVP#104 · Filter by author rkb965 opened on Nov 12, 2024

• FarmCPU output: NA in the fields of allelic effect, SE, and p-value

  xiaolei-lab/rMVP#101 · Filter by author AndModica opened on Sep 10, 2024

• Warning message not reflected by the output

  xiaolei-lab/rMVP#99 · Filter by author AndModica opened on Aug 2, 2024
  2

• Problems on Import genotype file to R from TASSEL

  xiaolei-lab/rMVP#98 · Filter by author wangchunli2024 opened on Jul 13, 2024
  8

• No PC or Kinship generated

  xiaolei-lab/rMVP#97 · Filter by author ramendra-sarma opened on Apr 9, 2024

• Question about PCA analysis

  xiaolei-lab/rMVP#96 · Filter by author 1795106897 opened on Mar 19, 2024

• Manhattan plot

  xiaolei-lab/rMVP#95 · Filter by author elissaralam opened on Feb 8, 2024

• NA is not allowed in genotype, use 'MVP.Data.impute' to impute

  xiaolei-lab/rMVP#94 · Filter by author suvihon opened on Dec 14, 2023
  5

• Fitting PCs with nPC vs CV

  xiaolei-lab/rMVP#93 · Filter by author JandehF opened on Dec 6, 2023
  3

• A question about VCF format conversion

  xiaolei-lab/rMVP#92 · Filter by author yuxizhang01 opened on Dec 5, 2023
  3

• How can I calculate kinship matrix using the geno matrix?

  xiaolei-lab/rMVP#91 · Filter by author bechee opened on Nov 28, 2023

• Can rMVP work on continuous genotype data?

  xiaolei-lab/rMVP#87 · Filter by author White-Shinobi opened on Aug 16, 2023
  1

• PCA code given in the main pages only giving the 2D PCA, but image of 3D PCA plot is also given but its code is not provide, kindly please provide the code for 3D plot

  xiaolei-lab/rMVP#86 · Filter by author krishna10597 opened on Jun 19, 2023

• Total 1 individuals removed due to missings Error in GetElements.bm(x, i, j) : Illegal column index usage in extraction. Calls: MVP -> [ -> [ -> .local -> GetElements.bm

  xiaolei-lab/rMVP#85 · Filter by author kmosi0 opened on May 19, 2023

• ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.

  xiaolei-lab/rMVP#84 · Filter by author rupesht opened on Jan 4, 2023
  1

• ERROR: At least 2 columns in the phenotype file should be specified, please check the parameter 'sep.phe'.

  xiaolei-lab/rMVP#83 · Filter by author rupesht opened on Jan 3, 2023
  6